Persimmon virus A

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Cytorhabdovirus; Persimmon cytorhabdovirus

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R4WAK7|R4WAK7_9RHAB Movement protein BC1 OS=Persimmon virus A OX=1211480 PE=3 SV=1
MM1 pKa = 7.7GDD3 pKa = 3.55SDD5 pKa = 3.89KK6 pKa = 11.48VNYY9 pKa = 10.17SGIGNPVGDD18 pKa = 4.05YY19 pKa = 10.78DD20 pKa = 4.56YY21 pKa = 11.5VGHH24 pKa = 6.93NSGDD28 pKa = 3.41DD29 pKa = 3.71SYY31 pKa = 11.01TGEE34 pKa = 4.16HH35 pKa = 5.17VVEE38 pKa = 4.48SVSVPEE44 pKa = 3.97VHH46 pKa = 6.68NEE48 pKa = 3.35NAVADD53 pKa = 3.68KK54 pKa = 10.43RR55 pKa = 11.84ARR57 pKa = 11.84VTPAKK62 pKa = 10.48DD63 pKa = 3.46VISWLSLHH71 pKa = 6.09SKK73 pKa = 10.42RR74 pKa = 11.84GGLVIPVEE82 pKa = 4.22MKK84 pKa = 10.69NYY86 pKa = 10.07LLSLSAEE93 pKa = 4.15DD94 pKa = 4.47LMEE97 pKa = 4.35EE98 pKa = 4.2RR99 pKa = 11.84DD100 pKa = 3.31VEE102 pKa = 4.47MFVKK106 pKa = 10.6GYY108 pKa = 8.04VFCSSSRR115 pKa = 11.84IIPNMQSVVNDD126 pKa = 3.27IQAEE130 pKa = 4.22VRR132 pKa = 11.84NLQRR136 pKa = 11.84EE137 pKa = 4.34SNKK140 pKa = 10.13NVDD143 pKa = 3.46ILRR146 pKa = 11.84SMEE149 pKa = 4.01KK150 pKa = 9.8QGKK153 pKa = 5.94STEE156 pKa = 4.05MEE158 pKa = 3.51IAAAVATIRR167 pKa = 11.84SDD169 pKa = 2.9MVTAIKK175 pKa = 10.4SALKK179 pKa = 9.87EE180 pKa = 3.95QVTATSSSSGKK191 pKa = 9.92VEE193 pKa = 3.87LKK195 pKa = 10.81VRR197 pKa = 11.84TEE199 pKa = 3.86KK200 pKa = 10.71QAGLDD205 pKa = 3.69VKK207 pKa = 10.17QVPLLINPTTSKK219 pKa = 10.86LPRR222 pKa = 11.84KK223 pKa = 9.09PDD225 pKa = 3.45LEE227 pKa = 4.07AVRR230 pKa = 11.84PSSSKK235 pKa = 10.12SSKK238 pKa = 10.24EE239 pKa = 3.68VTLNEE244 pKa = 3.97LKK246 pKa = 10.54RR247 pKa = 11.84IFMCAVGVEE256 pKa = 3.86ADD258 pKa = 3.44IVSVLTDD265 pKa = 3.57EE266 pKa = 5.35EE267 pKa = 4.36VDD269 pKa = 4.66AMLTANDD276 pKa = 4.01YY277 pKa = 11.76YY278 pKa = 10.67EE279 pKa = 4.3FCNDD283 pKa = 3.76LDD285 pKa = 4.53DD286 pKa = 5.81DD287 pKa = 4.49GVRR290 pKa = 11.84KK291 pKa = 9.64EE292 pKa = 4.04FSEE295 pKa = 4.16IFNKK299 pKa = 10.91AIDD302 pKa = 3.93QLNKK306 pKa = 9.94EE307 pKa = 4.51AEE309 pKa = 4.26EE310 pKa = 4.1EE311 pKa = 4.22DD312 pKa = 3.65

Molecular weight: 34.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R4WAR4|R4WAR4_9RHAB Matrix protein OS=Persimmon virus A OX=1211480 PE=4 SV=1
MM1 pKa = 7.34TSFVSTFKK9 pKa = 11.49GEE11 pKa = 4.08LNADD15 pKa = 3.48YY16 pKa = 8.79TQQVVKK22 pKa = 10.61LSKK25 pKa = 10.4KK26 pKa = 10.63LPILQSLWISAGFDD40 pKa = 3.07NVSITKK46 pKa = 10.09LAFSYY51 pKa = 10.71KK52 pKa = 9.97SRR54 pKa = 11.84CPKK57 pKa = 10.17AATGVVEE64 pKa = 3.55ITIRR68 pKa = 11.84DD69 pKa = 3.85LRR71 pKa = 11.84LEE73 pKa = 4.48DD74 pKa = 4.0ADD76 pKa = 3.79KK77 pKa = 11.54QEE79 pKa = 4.18VAFVTFNVKK88 pKa = 10.19DD89 pKa = 3.52WVEE92 pKa = 4.24LSWSYY97 pKa = 10.06PVWFHH102 pKa = 6.39CTDD105 pKa = 3.68FNGKK109 pKa = 8.95HH110 pKa = 5.51EE111 pKa = 4.81SVLDD115 pKa = 3.53MCLDD119 pKa = 3.74VVDD122 pKa = 4.84TNMSEE127 pKa = 4.05QFSLGSYY134 pKa = 9.46KK135 pKa = 9.93MKK137 pKa = 10.03IYY139 pKa = 10.81YY140 pKa = 9.68RR141 pKa = 11.84VQNQITKK148 pKa = 9.58FRR150 pKa = 11.84PSINRR155 pKa = 11.84AYY157 pKa = 10.84LIDD160 pKa = 3.64QTASPGAVITQRR172 pKa = 11.84RR173 pKa = 11.84KK174 pKa = 8.88EE175 pKa = 3.89DD176 pKa = 3.28HH177 pKa = 6.75NKK179 pKa = 9.92RR180 pKa = 11.84KK181 pKa = 10.19SNRR184 pKa = 11.84TSLSEE189 pKa = 4.02EE190 pKa = 4.07EE191 pKa = 4.29ISIQEE196 pKa = 3.72EE197 pKa = 4.79VIVHH201 pKa = 6.28KK202 pKa = 10.81EE203 pKa = 3.88NILDD207 pKa = 3.62RR208 pKa = 11.84SRR210 pKa = 11.84SYY212 pKa = 11.18LSSQPRR218 pKa = 11.84QCAKK222 pKa = 10.73

Molecular weight: 25.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3821

188

2089

636.8

72.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.711 ± 0.934

1.989 ± 0.401

6.281 ± 0.307

6.229 ± 0.596

3.298 ± 0.362

5.208 ± 0.416

1.937 ± 0.371

6.569 ± 0.531

7.485 ± 0.332

9.16 ± 0.515

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

4.083 ± 0.59

4.632 ± 0.759

4.057 ± 0.237

2.643 ± 0.377

5.025 ± 0.451

8.898 ± 0.632

6.386 ± 0.835

6.046 ± 0.974

1.439 ± 0.267

3.926 ± 0.544
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski