Lentibacillus persicus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lentibacillus

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3300 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I1S6A7|A0A1I1S6A7_9BACI Endonuclease I OS=Lentibacillus persicus OX=640948 GN=SAMN05216238_101253 PE=4 SV=1
MM1 pKa = 7.27KK2 pKa = 10.29KK3 pKa = 10.59KK4 pKa = 10.05MIIILSSIVVLLVALYY20 pKa = 9.25FVVDD24 pKa = 3.93YY25 pKa = 11.21KK26 pKa = 11.12NQQAMGDD33 pKa = 3.7NEE35 pKa = 4.1NPYY38 pKa = 10.78GKK40 pKa = 10.13EE41 pKa = 4.16DD42 pKa = 4.22LDD44 pKa = 4.24QATIDD49 pKa = 3.79QLDD52 pKa = 3.56NPNYY56 pKa = 9.78QNQILPDD63 pKa = 3.8EE64 pKa = 5.01LSDD67 pKa = 3.72KK68 pKa = 11.24LEE70 pKa = 4.43NGEE73 pKa = 4.17DD74 pKa = 3.52MMVYY78 pKa = 10.05FYY80 pKa = 11.25DD81 pKa = 3.96PTCPHH86 pKa = 6.31CQEE89 pKa = 3.98LTPRR93 pKa = 11.84LVPIAEE99 pKa = 4.36DD100 pKa = 3.4MNVDD104 pKa = 3.65MKK106 pKa = 11.12KK107 pKa = 10.86LNLLEE112 pKa = 5.3FQGAWNTYY120 pKa = 9.16GIQSTPTLVYY130 pKa = 10.52FEE132 pKa = 5.7DD133 pKa = 4.58GEE135 pKa = 4.42EE136 pKa = 3.82VDD138 pKa = 5.31RR139 pKa = 11.84INGAQQNEE147 pKa = 4.25LFEE150 pKa = 5.34AFFNEE155 pKa = 4.19YY156 pKa = 10.59AADD159 pKa = 4.06DD160 pKa = 4.13SGDD163 pKa = 3.73EE164 pKa = 4.15QEE166 pKa = 5.43AGAA169 pKa = 4.85

Molecular weight: 19.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I1UQ82|A0A1I1UQ82_9BACI 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Lentibacillus persicus OX=640948 GN=ispE PE=3 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84KK11 pKa = 9.23RR12 pKa = 11.84KK13 pKa = 8.49KK14 pKa = 8.63VHH16 pKa = 5.7GFRR19 pKa = 11.84KK20 pKa = 9.73RR21 pKa = 11.84MKK23 pKa = 10.42SKK25 pKa = 10.78DD26 pKa = 2.93GRR28 pKa = 11.84QVLKK32 pKa = 10.25RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.96GRR39 pKa = 11.84KK40 pKa = 8.7VLSAA44 pKa = 4.05

Molecular weight: 5.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3300

0

3300

945704

25

1614

286.6

32.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.488 ± 0.045

0.6 ± 0.012

5.722 ± 0.038

7.555 ± 0.054

4.394 ± 0.033

7.082 ± 0.041

2.137 ± 0.022

7.488 ± 0.042

6.178 ± 0.041

9.336 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.958 ± 0.02

4.575 ± 0.029

3.691 ± 0.025

3.748 ± 0.028

4.085 ± 0.028

5.953 ± 0.03

5.542 ± 0.025

7.001 ± 0.037

1.01 ± 0.015

3.457 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski