Vibrio palustris

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3328 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1R4B721|A0A1R4B721_9VIBR Uncharacterized protein OS=Vibrio palustris OX=1918946 GN=VPAL9027_02667 PE=4 SV=1
MM1 pKa = 7.58KK2 pKa = 10.37KK3 pKa = 10.17LFPAITGLLLIGAYY17 pKa = 10.09SLPTYY22 pKa = 9.95AASNNDD28 pKa = 2.81SGLYY32 pKa = 9.63VGGNVGYY39 pKa = 10.74VKK41 pKa = 10.0IDD43 pKa = 3.5GQDD46 pKa = 3.63DD47 pKa = 3.82FDD49 pKa = 7.01DD50 pKa = 5.03DD51 pKa = 4.39NEE53 pKa = 4.52VYY55 pKa = 10.32QGLLGYY61 pKa = 10.25RR62 pKa = 11.84INPYY66 pKa = 10.41LGVEE70 pKa = 4.43GSYY73 pKa = 10.65IDD75 pKa = 3.57FGKK78 pKa = 10.92YY79 pKa = 9.95GSSLANAKK87 pKa = 9.0TDD89 pKa = 3.41GYY91 pKa = 9.2TAALKK96 pKa = 8.95LTAPIGDD103 pKa = 3.7RR104 pKa = 11.84VDD106 pKa = 5.24LYY108 pKa = 11.65AKK110 pKa = 10.43GGQLWYY116 pKa = 8.93NTDD119 pKa = 3.12YY120 pKa = 11.33DD121 pKa = 3.58IAGASGDD128 pKa = 3.88KK129 pKa = 10.85DD130 pKa = 3.54DD131 pKa = 4.18TAVFAGAGVGFKK143 pKa = 9.58VTDD146 pKa = 3.56NFIVNAEE153 pKa = 4.15YY154 pKa = 9.15TWYY157 pKa = 10.35DD158 pKa = 2.52VDD160 pKa = 6.32LDD162 pKa = 4.13VKK164 pKa = 10.24DD165 pKa = 4.04VRR167 pKa = 11.84DD168 pKa = 4.04GSDD171 pKa = 2.73TNTDD175 pKa = 4.01FNQVTAGVEE184 pKa = 3.94YY185 pKa = 10.77RR186 pKa = 11.84FF187 pKa = 3.97

Molecular weight: 20.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1R4B7G9|A0A1R4B7G9_9VIBR Probable chromosome-partitioning protein ParB OS=Vibrio palustris OX=1918946 GN=parB PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.42RR12 pKa = 11.84KK13 pKa = 9.36RR14 pKa = 11.84SHH16 pKa = 6.15GFRR19 pKa = 11.84ARR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 9.34VINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.74GRR39 pKa = 11.84KK40 pKa = 8.91RR41 pKa = 11.84LSKK44 pKa = 10.84

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3328

0

3328

1057203

29

2360

317.7

35.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.53 ± 0.04

1.069 ± 0.014

5.614 ± 0.035

5.853 ± 0.043

3.971 ± 0.027

6.735 ± 0.038

2.61 ± 0.025

6.385 ± 0.035

5.048 ± 0.032

10.192 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.789 ± 0.019

4.15 ± 0.025

3.949 ± 0.028

4.908 ± 0.036

4.706 ± 0.03

6.569 ± 0.029

5.561 ± 0.026

6.979 ± 0.037

1.278 ± 0.019

3.106 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski