Xanthomonas phage phiL7

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Eisenstarkvirus; Xanthomonas virus PhiL7

Average proteome isoelectric point is 6.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 58 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C4ML58|C4ML58_9CAUD p58 OS=Xanthomonas phage phiL7 OX=538979 PE=4 SV=1
MM1 pKa = 7.42MYY3 pKa = 10.47LVEE6 pKa = 4.23ITGAYY11 pKa = 10.3DD12 pKa = 3.61GFPNVLSDD20 pKa = 3.77YY21 pKa = 10.79CLEE24 pKa = 4.77ADD26 pKa = 4.97LSNLVRR32 pKa = 11.84KK33 pKa = 7.91YY34 pKa = 7.94TGRR37 pKa = 11.84YY38 pKa = 7.89YY39 pKa = 10.66RR40 pKa = 11.84IEE42 pKa = 4.46CDD44 pKa = 3.19EE45 pKa = 3.96QDD47 pKa = 3.68RR48 pKa = 11.84DD49 pKa = 3.85DD50 pKa = 3.69RR51 pKa = 11.84TIGYY55 pKa = 9.29VVDD58 pKa = 4.14VPWRR62 pKa = 11.84MDD64 pKa = 3.26DD65 pKa = 3.86RR66 pKa = 11.84DD67 pKa = 3.61WLGTYY72 pKa = 10.78ALADD76 pKa = 4.23LLRR79 pKa = 11.84KK80 pKa = 9.7AIAMQGEE87 pKa = 4.28EE88 pKa = 4.76AIDD91 pKa = 3.62IAVDD95 pKa = 3.95YY96 pKa = 10.73YY97 pKa = 11.54DD98 pKa = 4.36EE99 pKa = 4.68DD100 pKa = 3.66

Molecular weight: 11.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C4ML41|C4ML41_9CAUD p41 OS=Xanthomonas phage phiL7 OX=538979 PE=4 SV=1
MM1 pKa = 7.31TRR3 pKa = 11.84LTQASLKK10 pKa = 7.63TWRR13 pKa = 11.84AGQQTKK19 pKa = 9.07QAGRR23 pKa = 11.84CALCGLPLGSSPPHH37 pKa = 6.9DD38 pKa = 3.44PVGDD42 pKa = 3.71HH43 pKa = 6.54DD44 pKa = 4.48HH45 pKa = 6.63RR46 pKa = 11.84TGAMRR51 pKa = 11.84GVLHH55 pKa = 6.94RR56 pKa = 11.84GCNSLLGCVEE66 pKa = 4.25NNAPRR71 pKa = 11.84YY72 pKa = 7.84GVRR75 pKa = 11.84DD76 pKa = 2.96IGVFANGVAQYY87 pKa = 10.94LRR89 pKa = 11.84AHH91 pKa = 6.92IVNTTGLLHH100 pKa = 6.62PSFRR104 pKa = 11.84TPDD107 pKa = 3.32EE108 pKa = 3.76KK109 pKa = 10.7RR110 pKa = 11.84LRR112 pKa = 11.84RR113 pKa = 11.84NAKK116 pKa = 9.3ARR118 pKa = 11.84KK119 pKa = 8.96KK120 pKa = 9.79RR121 pKa = 11.84AANKK125 pKa = 10.26GLTDD129 pKa = 3.87AEE131 pKa = 4.33

Molecular weight: 14.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

58

0

58

12903

54

1475

222.5

24.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.889 ± 0.594

1.132 ± 0.17

5.464 ± 0.229

5.588 ± 0.3

3.03 ± 0.197

8.548 ± 0.227

2.286 ± 0.298

4.162 ± 0.185

4.58 ± 0.362

8.471 ± 0.294

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.527 ± 0.144

3.534 ± 0.195

4.425 ± 0.265

4.115 ± 0.302

6.448 ± 0.318

6.177 ± 0.364

6.433 ± 0.369

7.239 ± 0.3

1.798 ± 0.153

3.154 ± 0.234
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski