Paracoccus aminophilus JCM 7686

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus; Paracoccus aminophilus

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4462 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S5XYM4|S5XYM4_PARAH ABC-type polar amino acid transport system ATPase component OS=Paracoccus aminophilus JCM 7686 OX=1367847 GN=JCM7686_1434 PE=3 SV=1
MM1 pKa = 7.07NQTLFLLLGVLGLAGLGSLMSSSSDD26 pKa = 3.04SHH28 pKa = 7.74GPEE31 pKa = 4.39TPPDD35 pKa = 3.93PYY37 pKa = 11.3GDD39 pKa = 3.49RR40 pKa = 11.84NVIEE44 pKa = 4.33GTEE47 pKa = 4.09GDD49 pKa = 3.95DD50 pKa = 4.32TIEE53 pKa = 4.26GTPGGDD59 pKa = 4.42AILTFDD65 pKa = 5.14GDD67 pKa = 3.89DD68 pKa = 3.65SVNGGGGDD76 pKa = 3.95DD77 pKa = 4.73IIWTGRR83 pKa = 11.84GNDD86 pKa = 3.79TVDD89 pKa = 3.19ATPGNDD95 pKa = 3.16LVYY98 pKa = 10.68LGEE101 pKa = 5.17GDD103 pKa = 3.9DD104 pKa = 5.39HH105 pKa = 7.99YY106 pKa = 11.66GAYY109 pKa = 10.38NPGVDD114 pKa = 3.86EE115 pKa = 4.54GHH117 pKa = 6.67DD118 pKa = 3.75TVAGGSGDD126 pKa = 4.52DD127 pKa = 4.14VIITNGGEE135 pKa = 3.54HH136 pKa = 7.13HH137 pKa = 7.32IYY139 pKa = 11.08GDD141 pKa = 4.16ADD143 pKa = 3.9PNDD146 pKa = 4.01DD147 pKa = 5.5SRR149 pKa = 11.84DD150 pKa = 3.64DD151 pKa = 3.78DD152 pKa = 4.06HH153 pKa = 9.26ASGNDD158 pKa = 3.48SIYY161 pKa = 11.15DD162 pKa = 3.52NGGTVYY168 pKa = 10.91VDD170 pKa = 3.82AGPGNDD176 pKa = 5.42LIWSPDD182 pKa = 3.72DD183 pKa = 3.8SDD185 pKa = 4.85KK186 pKa = 11.6DD187 pKa = 4.04HH188 pKa = 7.84PDD190 pKa = 3.08TLYY193 pKa = 11.3GGDD196 pKa = 4.11GDD198 pKa = 4.03DD199 pKa = 3.81TIYY202 pKa = 11.18AGGHH206 pKa = 6.91DD207 pKa = 4.28ILDD210 pKa = 4.02GGKK213 pKa = 10.74GSDD216 pKa = 3.6LYY218 pKa = 10.61IIRR221 pKa = 11.84SDD223 pKa = 3.04SSGPVDD229 pKa = 3.5ITYY232 pKa = 11.23GDD234 pKa = 3.91ADD236 pKa = 4.34NIQIALPADD245 pKa = 3.68YY246 pKa = 10.39TGDD249 pKa = 3.1KK250 pKa = 10.36HH251 pKa = 8.05FEE253 pKa = 4.03YY254 pKa = 10.99VQDD257 pKa = 3.71GDD259 pKa = 3.84NVRR262 pKa = 11.84LLVDD266 pKa = 4.11GNDD269 pKa = 3.35LALLRR274 pKa = 11.84DD275 pKa = 3.63VKK277 pKa = 10.63VANVRR282 pKa = 11.84DD283 pKa = 3.6VSFINQSDD291 pKa = 3.96APKK294 pKa = 10.72APWQTTT300 pKa = 3.13

Molecular weight: 31.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S5Y3I3|S5Y3I3_PARAH Selenide water dikinase OS=Paracoccus aminophilus JCM 7686 OX=1367847 GN=selD PE=3 SV=1
MM1 pKa = 7.74SKK3 pKa = 8.95RR4 pKa = 11.84TYY6 pKa = 10.2QPSNLVRR13 pKa = 11.84ARR15 pKa = 11.84RR16 pKa = 11.84HH17 pKa = 4.37GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.12GGRR29 pKa = 11.84RR30 pKa = 11.84VLNARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.0GRR40 pKa = 11.84KK41 pKa = 8.91SLSAA45 pKa = 3.86

Molecular weight: 5.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4462

0

4462

1439745

30

3161

322.7

34.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.982 ± 0.051

0.794 ± 0.011

5.574 ± 0.029

5.743 ± 0.032

3.548 ± 0.022

8.732 ± 0.035

1.992 ± 0.016

5.273 ± 0.024

3.012 ± 0.032

10.551 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.527 ± 0.018

2.454 ± 0.022

5.435 ± 0.029

3.273 ± 0.021

7.138 ± 0.035

5.391 ± 0.027

5.261 ± 0.026

6.824 ± 0.029

1.416 ± 0.013

2.081 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski