Cedecea neteri

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cedecea

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4293 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A089PZ75|A0A089PZ75_9ENTR Acetylornithine/succinyldiaminopimelate aminotransferase OS=Cedecea neteri OX=158822 GN=argD PE=3 SV=1
MM1 pKa = 7.35TKK3 pKa = 10.42VLLCVGNSMMGDD15 pKa = 3.65DD16 pKa = 4.5GAGPLLAEE24 pKa = 4.76KK25 pKa = 10.38CQASPQGDD33 pKa = 3.32WVVIDD38 pKa = 4.49GGSAPEE44 pKa = 3.93NDD46 pKa = 2.96VVAIRR51 pKa = 11.84EE52 pKa = 4.17LHH54 pKa = 6.59PEE56 pKa = 3.82LLLIVDD62 pKa = 4.5ATDD65 pKa = 3.01MMLNPGEE72 pKa = 4.29IRR74 pKa = 11.84VIDD77 pKa = 4.32PDD79 pKa = 5.18DD80 pKa = 3.61IAEE83 pKa = 4.13MFMMTTHH90 pKa = 6.45NMPLNYY96 pKa = 10.23LVDD99 pKa = 3.78QLQEE103 pKa = 4.11DD104 pKa = 3.84VGEE107 pKa = 4.36VVFLGIQPDD116 pKa = 3.43IVGFYY121 pKa = 11.02YY122 pKa = 10.43PMTEE126 pKa = 3.73AVKK129 pKa = 10.37AAVEE133 pKa = 3.92QVYY136 pKa = 10.01QRR138 pKa = 11.84LATWSGYY145 pKa = 10.35GGYY148 pKa = 10.15AQLTAEE154 pKa = 4.34EE155 pKa = 4.79TEE157 pKa = 4.43GLL159 pKa = 3.87

Molecular weight: 17.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A089PYJ0|A0A089PYJ0_9ENTR Protein PsiE homolog OS=Cedecea neteri OX=158822 GN=psiE PE=3 SV=1
MM1 pKa = 7.58PALAGGAVRR10 pKa = 11.84IILLLLCAFTLFLTGYY26 pKa = 9.53NFQQMLPAGLWWQAITLPQVTDD48 pKa = 3.2VSQMLFHH55 pKa = 6.66YY56 pKa = 10.31SLLPRR61 pKa = 11.84TTLALLTGAGLALAGCLFQHH81 pKa = 7.43ILRR84 pKa = 11.84NPLAEE89 pKa = 4.27PATLGVAAGAQLGLTLATLFLAGAGEE115 pKa = 4.39TGRR118 pKa = 11.84QLAALAGAMVVGSIVLGAAWGKK140 pKa = 10.44RR141 pKa = 11.84MSPVTLILAGLVLGLYY157 pKa = 10.06CGAVKK162 pKa = 10.66SFLVLFNHH170 pKa = 6.53EE171 pKa = 4.11RR172 pKa = 11.84LQNLFIWSSGMLNQYY187 pKa = 9.95DD188 pKa = 3.55WAGVEE193 pKa = 4.29FLWPRR198 pKa = 11.84LLAGLVLIVLMIRR211 pKa = 11.84PLGMLALDD219 pKa = 3.74DD220 pKa = 3.93TVLRR224 pKa = 11.84GLGMKK229 pKa = 10.15LALVRR234 pKa = 11.84VGGLFLALLLSSMLVSVVGVIGFIGLFAPVLAGMFGVRR272 pKa = 11.84RR273 pKa = 11.84LLPKK277 pKa = 10.45LLASMATGALLLLLSDD293 pKa = 4.9QLVIWLGSHH302 pKa = 4.52WQEE305 pKa = 4.22LPTGAVTALVGAPLMLWLLPRR326 pKa = 11.84LRR328 pKa = 11.84HH329 pKa = 5.25QRR331 pKa = 11.84LAATQDD337 pKa = 2.97ASIAAEE343 pKa = 3.88RR344 pKa = 11.84HH345 pKa = 5.33LSPGTVLLMCAALLLVALLALGVGRR370 pKa = 11.84EE371 pKa = 3.98SAGWFVGLQEE381 pKa = 3.95MWQWRR386 pKa = 11.84WPRR389 pKa = 11.84VLSAIAAGAMLAAAGTLVQKK409 pKa = 7.85MTGNPMASPEE419 pKa = 4.03VLGVSSGAACAIVLLTFLVPGDD441 pKa = 3.46VSAWQLPAGFAGATLTLLAMLVLARR466 pKa = 11.84TGLAPGRR473 pKa = 11.84LLLTGVALSTVFATLLTLYY492 pKa = 9.9LASGDD497 pKa = 3.91PRR499 pKa = 11.84SGAVLTWLSGSTWKK513 pKa = 8.71VTGQQALVSGGMALVLIGLTPLVRR537 pKa = 11.84RR538 pKa = 11.84WLTILPLGGEE548 pKa = 4.3AAQALGVALSRR559 pKa = 11.84SRR561 pKa = 11.84ISILVLAAGLVAAATLCVGPLSFVGLMAPHH591 pKa = 7.08MARR594 pKa = 11.84MLGFRR599 pKa = 11.84RR600 pKa = 11.84AVPQLVVAIALGAGLMLVADD620 pKa = 3.91WLGRR624 pKa = 11.84SILFPFQIPAGLLATLCGAPYY645 pKa = 9.81FIWLLRR651 pKa = 11.84KK652 pKa = 9.43AA653 pKa = 4.13

Molecular weight: 68.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4293

0

4293

1387837

29

5414

323.3

35.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.912 ± 0.042

0.993 ± 0.015

5.118 ± 0.024

5.683 ± 0.041

3.833 ± 0.023

7.625 ± 0.046

2.196 ± 0.019

5.629 ± 0.031

4.227 ± 0.031

11.026 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.719 ± 0.02

3.714 ± 0.028

4.483 ± 0.026

4.501 ± 0.032

5.559 ± 0.041

6.07 ± 0.035

5.304 ± 0.049

7.209 ± 0.034

1.505 ± 0.016

2.694 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski