Liao ning virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Reoviridae; Sedoreovirinae; Seadornavirus

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q2TV14|Q2TV14_9REOV VP6 OS=Liao ning virus OX=246280 PE=4 SV=1
MM1 pKa = 8.25DD2 pKa = 4.91IPSPNCGSVQKK13 pKa = 11.03NCFQVYY19 pKa = 9.93KK20 pKa = 9.59SQNVYY25 pKa = 9.86RR26 pKa = 11.84VRR28 pKa = 11.84FCVEE32 pKa = 3.85GKK34 pKa = 9.48IHH36 pKa = 7.16DD37 pKa = 4.05VPLPGVNTHH46 pKa = 6.49RR47 pKa = 11.84DD48 pKa = 3.05IIGTVKK54 pKa = 10.1YY55 pKa = 9.98FCEE58 pKa = 4.0LMGLNIVDD66 pKa = 3.48NSLRR70 pKa = 11.84LNWLNLSDD78 pKa = 4.07MKK80 pKa = 11.42NHH82 pKa = 6.66GDD84 pKa = 3.43NVTLAKK90 pKa = 10.5VGSEE94 pKa = 4.0YY95 pKa = 11.47GDD97 pKa = 3.92LFVKK101 pKa = 10.47KK102 pKa = 10.56LPTLPINIHH111 pKa = 4.28STNYY115 pKa = 9.6VFGKK119 pKa = 9.2YY120 pKa = 8.59SVFARR125 pKa = 11.84VHH127 pKa = 6.37GIVKK131 pKa = 10.36LLNDD135 pKa = 3.92DD136 pKa = 4.18NYY138 pKa = 11.49DD139 pKa = 3.38VGVILEE145 pKa = 4.25KK146 pKa = 10.95CNEE149 pKa = 3.81IRR151 pKa = 11.84VMTVNIIVMGLKK163 pKa = 10.34SLMDD167 pKa = 3.23SHH169 pKa = 7.48RR170 pKa = 11.84EE171 pKa = 3.99SGGTLHH177 pKa = 7.54GDD179 pKa = 3.36CTVQNLMCDD188 pKa = 3.08KK189 pKa = 10.92FGMLKK194 pKa = 10.55LVDD197 pKa = 4.57PGNLMSQTVIWKK209 pKa = 9.96NDD211 pKa = 2.98TQYY214 pKa = 11.37FGNTVDD220 pKa = 6.01DD221 pKa = 4.59EE222 pKa = 4.77VCSFVMACLKK232 pKa = 8.0TTANLRR238 pKa = 11.84NIEE241 pKa = 4.15TSEE244 pKa = 3.8LTIPFITDD252 pKa = 4.18LYY254 pKa = 11.44LLDD257 pKa = 4.48TVLSDD262 pKa = 3.75PNVIHH267 pKa = 6.44GTRR270 pKa = 11.84EE271 pKa = 4.22SGWLEE276 pKa = 3.94VGSDD280 pKa = 3.8FVSIVQMFVALANMVRR296 pKa = 11.84PYY298 pKa = 11.27NLDD301 pKa = 3.6DD302 pKa = 3.72VVSALKK308 pKa = 9.02TQVTGEE314 pKa = 4.26NEE316 pKa = 4.01TFSNVIEE323 pKa = 4.0KK324 pKa = 10.65HH325 pKa = 5.86EE326 pKa = 5.01DD327 pKa = 3.6GEE329 pKa = 4.81HH330 pKa = 6.87PDD332 pKa = 3.59SDD334 pKa = 4.72LEE336 pKa = 4.16

Molecular weight: 37.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q2TV15|Q2TV15_9REOV VP5 OS=Liao ning virus OX=246280 PE=4 SV=1
MM1 pKa = 7.58SKK3 pKa = 10.79LSTIPRR9 pKa = 11.84TRR11 pKa = 11.84SQVVGLTSKK20 pKa = 11.01LKK22 pKa = 10.88DD23 pKa = 3.37FTKK26 pKa = 10.56SVEE29 pKa = 4.1KK30 pKa = 8.54TTLLTQSEE38 pKa = 4.68LKK40 pKa = 9.99KK41 pKa = 9.38QHH43 pKa = 5.96RR44 pKa = 11.84HH45 pKa = 5.67LLSQQPEE52 pKa = 4.58LFSGLAKK59 pKa = 10.68LYY61 pKa = 9.31TSNVSKK67 pKa = 10.63FEE69 pKa = 4.39RR70 pKa = 11.84IIRR73 pKa = 11.84LYY75 pKa = 10.38GGQGSKK81 pKa = 10.72HH82 pKa = 6.52SISSVGFSHH91 pKa = 8.01LIEE94 pKa = 4.25YY95 pKa = 9.52CNNYY99 pKa = 9.93DD100 pKa = 5.58LPDD103 pKa = 4.88DD104 pKa = 5.2DD105 pKa = 4.75STLKK109 pKa = 10.75AICFTIFQIHH119 pKa = 6.06SNEE122 pKa = 3.75LRR124 pKa = 11.84NGGANALFTIASEE137 pKa = 4.43YY138 pKa = 10.75FNAPAVKK145 pKa = 9.78EE146 pKa = 4.01IVGEE150 pKa = 3.98HH151 pKa = 5.25VKK153 pKa = 10.39IKK155 pKa = 10.36SCNKK159 pKa = 8.91VPVAIVNFKK168 pKa = 10.83ALTQIIPYY176 pKa = 9.67RR177 pKa = 11.84GVKK180 pKa = 9.79ALRR183 pKa = 11.84TKK185 pKa = 10.79LLEE188 pKa = 4.46TQDD191 pKa = 3.84GVALEE196 pKa = 5.09HH197 pKa = 6.87IGSFYY202 pKa = 9.92NTCKK206 pKa = 10.5INGEE210 pKa = 3.72FDD212 pKa = 3.45AVSFCGLKK220 pKa = 10.31LRR222 pKa = 11.84QSCIVSVAGHH232 pKa = 7.26AIDD235 pKa = 5.03VGPDD239 pKa = 3.08YY240 pKa = 10.54YY241 pKa = 11.0RR242 pKa = 11.84QMLAEE247 pKa = 4.18VTALLKK253 pKa = 10.64LKK255 pKa = 10.28KK256 pKa = 9.96KK257 pKa = 9.08VGSVVMHH264 pKa = 6.74GNNQFGFVKK273 pKa = 10.29PLDD276 pKa = 3.84ASQTQNVTQIRR287 pKa = 11.84KK288 pKa = 8.99ILNDD292 pKa = 3.32ASRR295 pKa = 11.84VSFINVRR302 pKa = 11.84NAASRR307 pKa = 11.84DD308 pKa = 3.65EE309 pKa = 4.21MVYY312 pKa = 10.46AYY314 pKa = 9.6DD315 pKa = 3.93PCLLYY320 pKa = 11.12YY321 pKa = 9.4ITIPNNGNKK330 pKa = 8.65SHH332 pKa = 7.52CIQALNLSGLLEE344 pKa = 4.05HH345 pKa = 7.19RR346 pKa = 11.84LLHH349 pKa = 6.25FGSLGTSCRR358 pKa = 11.84DD359 pKa = 3.15PSCRR363 pKa = 11.84VIGIDD368 pKa = 3.66RR369 pKa = 11.84PEE371 pKa = 4.75LYY373 pKa = 10.44SEE375 pKa = 4.69LNRR378 pKa = 11.84IVDD381 pKa = 3.37NTTIKK386 pKa = 10.82DD387 pKa = 3.33RR388 pKa = 11.84ADD390 pKa = 3.14AMLEE394 pKa = 3.87INADD398 pKa = 3.4EE399 pKa = 4.11MSSVKK404 pKa = 10.6SSGSGKK410 pKa = 10.43SLTKK414 pKa = 10.33GKK416 pKa = 9.48YY417 pKa = 8.57VRR419 pKa = 11.84NSIDD423 pKa = 3.06KK424 pKa = 10.4GHH426 pKa = 6.7NLTDD430 pKa = 3.63LGKK433 pKa = 10.71ANGDD437 pKa = 3.67QYY439 pKa = 11.77SHH441 pKa = 6.82YY442 pKa = 10.71SQMSKK447 pKa = 10.64PSGSEE452 pKa = 3.0ISKK455 pKa = 10.64FITAEE460 pKa = 3.88AVKK463 pKa = 10.44GISDD467 pKa = 3.78SSLDD471 pKa = 3.61ATEE474 pKa = 5.21LSLKK478 pKa = 10.57LAMLQSSAVTIGASKK493 pKa = 11.29NEE495 pKa = 4.14TKK497 pKa = 10.39PVEE500 pKa = 4.38TKK502 pKa = 10.04VVKK505 pKa = 10.55APSVNKK511 pKa = 9.05TADD514 pKa = 3.52EE515 pKa = 4.29LEE517 pKa = 4.58EE518 pKa = 4.05II519 pKa = 4.67

Molecular weight: 57.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12

0

12

6079

174

1222

506.6

56.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.284 ± 0.511

1.25 ± 0.241

6.317 ± 0.409

4.951 ± 0.196

3.866 ± 0.361

5.79 ± 0.272

2.5 ± 0.348

6.498 ± 0.383

5.083 ± 0.456

9.048 ± 0.279

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.158 ± 0.218

6.662 ± 0.296

3.915 ± 0.14

2.632 ± 0.186

5.593 ± 0.352

8.11 ± 0.446

6.021 ± 0.195

7.715 ± 0.339

0.592 ± 0.091

4.014 ± 0.368
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski