Oat golden stripe virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Furovirus

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9IWA9|Q9IWA9_9VIRU Methyltransferase/RNA helicase OS=Oat golden stripe virus OX=45103 GN=ORF1 readthrough PE=4 SV=1
MM1 pKa = 7.74PVTPGYY7 pKa = 8.96TGYY10 pKa = 10.93NKK12 pKa = 10.06EE13 pKa = 4.36LNVMANTHH21 pKa = 5.47AFIRR25 pKa = 11.84MSTLMNQIEE34 pKa = 4.87GWQSTRR40 pKa = 11.84ASVLSHH46 pKa = 6.57LGIMLNAVSKK56 pKa = 10.73LGEE59 pKa = 3.92RR60 pKa = 11.84NFFSRR65 pKa = 11.84NKK67 pKa = 10.33RR68 pKa = 11.84FGTHH72 pKa = 5.06TQDD75 pKa = 3.63GDD77 pKa = 4.7EE78 pKa = 4.48IFCDD82 pKa = 3.64LGGEE86 pKa = 4.24AVGQVLGRR94 pKa = 11.84LTVALQPAKK103 pKa = 11.03GEE105 pKa = 4.22GTQTRR110 pKa = 11.84NSKK113 pKa = 10.51RR114 pKa = 11.84GVPPAAGQVEE124 pKa = 4.56GEE126 pKa = 4.27EE127 pKa = 4.43QGQSDD132 pKa = 4.05QTLQIANAVSDD143 pKa = 3.25LMNYY147 pKa = 8.81VRR149 pKa = 11.84TKK151 pKa = 10.59DD152 pKa = 3.42YY153 pKa = 11.4TMNEE157 pKa = 5.24CYY159 pKa = 9.66TQDD162 pKa = 3.5SFEE165 pKa = 4.41AKK167 pKa = 10.55YY168 pKa = 9.68NLKK171 pKa = 10.11WEE173 pKa = 4.69GSAXRR178 pKa = 11.84GGVSEE183 pKa = 4.12KK184 pKa = 10.29TRR186 pKa = 11.84VQVVEE191 pKa = 4.31EE192 pKa = 3.92LADD195 pKa = 4.99RR196 pKa = 11.84IVLADD201 pKa = 4.23DD202 pKa = 5.0LGIFPRR208 pKa = 11.84RR209 pKa = 11.84GEE211 pKa = 3.86NGFIIVDD218 pKa = 3.92EE219 pKa = 4.65PEE221 pKa = 3.78VLYY224 pKa = 11.17AEE226 pKa = 5.11LEE228 pKa = 4.18DD229 pKa = 4.95KK230 pKa = 10.72ILSFEE235 pKa = 4.11HH236 pKa = 6.28SVYY239 pKa = 10.31HH240 pKa = 5.93PRR242 pKa = 11.84AITVEE247 pKa = 4.34TEE249 pKa = 4.01VQPLTVKK256 pKa = 9.62TADD259 pKa = 3.67SEE261 pKa = 4.56NLVMMDD267 pKa = 4.27EE268 pKa = 4.41EE269 pKa = 4.79DD270 pKa = 4.07SIIVTEE276 pKa = 4.04VLVDD280 pKa = 4.06DD281 pKa = 4.58EE282 pKa = 6.04SDD284 pKa = 4.1YY285 pKa = 11.4FWLYY289 pKa = 11.45LLLLLVSVLISLFILLSRR307 pKa = 11.84PFILSLGNRR316 pKa = 11.84RR317 pKa = 11.84EE318 pKa = 3.99VFGGDD323 pKa = 2.62ICYY326 pKa = 10.39KK327 pKa = 8.7IAEE330 pKa = 4.51WLWKK334 pKa = 9.82VRR336 pKa = 11.84MWLLKK341 pKa = 9.48RR342 pKa = 11.84AMYY345 pKa = 10.43RR346 pKa = 11.84FGNLGVVRR354 pKa = 11.84KK355 pKa = 9.1NHH357 pKa = 5.91TKK359 pKa = 10.18SAMRR363 pKa = 11.84RR364 pKa = 11.84YY365 pKa = 9.99LRR367 pKa = 11.84DD368 pKa = 3.15YY369 pKa = 11.06NFQLEE374 pKa = 4.31GWEE377 pKa = 4.1TAINCSPGEE386 pKa = 3.98ALIAADD392 pKa = 3.29QHH394 pKa = 6.4VLVQEE399 pKa = 4.15VRR401 pKa = 11.84EE402 pKa = 4.02LLDD405 pKa = 3.79LEE407 pKa = 4.7GNLMSVEE414 pKa = 4.42KK415 pKa = 10.14IRR417 pKa = 11.84KK418 pKa = 8.8IFEE421 pKa = 4.12NYY423 pKa = 8.97NVNNYY428 pKa = 10.2KK429 pKa = 8.08ITKK432 pKa = 8.7WLDD435 pKa = 3.14KK436 pKa = 10.71QVIRR440 pKa = 11.84HH441 pKa = 6.06ALLAVNEE448 pKa = 4.26TLKK451 pKa = 10.89NDD453 pKa = 4.0EE454 pKa = 4.11ITLEE458 pKa = 3.95EE459 pKa = 4.38GMLNLACATFDD470 pKa = 4.59QILEE474 pKa = 4.38CDD476 pKa = 3.56VEE478 pKa = 4.48TQRR481 pKa = 11.84GSMYY485 pKa = 10.59FGDD488 pKa = 5.58LIALQFAFRR497 pKa = 11.84LIGTPEE503 pKa = 3.65FSDD506 pKa = 3.98FVVAYY511 pKa = 9.55KK512 pKa = 11.1GNLYY516 pKa = 9.45PCYY519 pKa = 9.75VEE521 pKa = 4.8AIKK524 pKa = 10.7RR525 pKa = 11.84HH526 pKa = 4.7ASKK529 pKa = 11.24LEE531 pKa = 3.9LQHH534 pKa = 8.41AEE536 pKa = 3.69DD537 pKa = 4.95DD538 pKa = 3.73DD539 pKa = 4.54RR540 pKa = 11.84KK541 pKa = 10.33RR542 pKa = 11.84SEE544 pKa = 5.09KK545 pKa = 10.58ALEE548 pKa = 3.96WLLMAGQGAFALSSAMEE565 pKa = 4.32TFTPAEE571 pKa = 4.2FQDD574 pKa = 3.45EE575 pKa = 4.25MRR577 pKa = 11.84QVVQAYY583 pKa = 10.4ADD585 pKa = 4.0TTFHH589 pKa = 6.38EE590 pKa = 4.72ADD592 pKa = 3.92RR593 pKa = 11.84PLLSGLGASSIGDD606 pKa = 3.44VASEE610 pKa = 4.24FVTGDD615 pKa = 3.01ISAGTDD621 pKa = 3.26VEE623 pKa = 4.76TSSSLSIGTASRR635 pKa = 11.84ARR637 pKa = 11.84KK638 pKa = 9.47RR639 pKa = 11.84SIARR643 pKa = 11.84NIRR646 pKa = 11.84MYY648 pKa = 10.65PGGAVAHH655 pKa = 6.55GGVKK659 pKa = 10.23APRR662 pKa = 11.84VSGTSGVGGMKK673 pKa = 9.58MKK675 pKa = 9.59FTSKK679 pKa = 10.3PMASS683 pKa = 3.38

Molecular weight: 76.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9QBU6|Q9QBU6_9VIRU Coat protein OS=Oat golden stripe virus OX=45103 GN=cp PE=4 SV=1
MM1 pKa = 7.16SAAVHH6 pKa = 6.07SCAKK10 pKa = 10.06CADD13 pKa = 3.2GFTRR17 pKa = 11.84VVCVSKK23 pKa = 10.98YY24 pKa = 9.91RR25 pKa = 11.84NSVYY29 pKa = 10.41KK30 pKa = 10.2SLGMEE35 pKa = 4.1VVKK38 pKa = 10.78CRR40 pKa = 11.84LPSACGVNCRR50 pKa = 11.84MPAALVLVKK59 pKa = 9.35GHH61 pKa = 7.49PEE63 pKa = 3.45LSMDD67 pKa = 4.04GFCGEE72 pKa = 3.89KK73 pKa = 9.85HH74 pKa = 5.94RR75 pKa = 11.84GYY77 pKa = 10.45VVSGAWRR84 pKa = 11.84HH85 pKa = 4.7AQLRR89 pKa = 11.84SLNAEE94 pKa = 3.95LDD96 pKa = 3.46KK97 pKa = 10.99LTEE100 pKa = 4.26KK101 pKa = 10.91EE102 pKa = 3.89EE103 pKa = 4.15SLRR106 pKa = 11.84TQIIVLTAAAKK117 pKa = 8.81TADD120 pKa = 3.47APVYY124 pKa = 10.38VPKK127 pKa = 10.62KK128 pKa = 9.39LNKK131 pKa = 10.25LKK133 pKa = 11.17VEE135 pKa = 4.15VSDD138 pKa = 3.65VTEE141 pKa = 4.95KK142 pKa = 10.28IHH144 pKa = 6.08QKK146 pKa = 10.34SVGLAVVMDD155 pKa = 5.86AILADD160 pKa = 4.56LSPDD164 pKa = 3.23ASPKK168 pKa = 9.82RR169 pKa = 11.84RR170 pKa = 11.84SPAA173 pKa = 3.07

Molecular weight: 18.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

4554

173

1853

759.0

85.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.851 ± 0.722

1.779 ± 0.235

6.588 ± 0.478

7.312 ± 0.436

3.931 ± 0.341

5.336 ± 0.694

1.954 ± 0.17

4.458 ± 0.231

7.246 ± 0.65

9.025 ± 0.199

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.942 ± 0.227

4.414 ± 0.371

3.491 ± 0.274

3.118 ± 0.305

5.797 ± 0.154

6.697 ± 0.355

5.951 ± 0.308

8.608 ± 0.376

1.098 ± 0.109

3.36 ± 0.095
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski