Caribou feces-associated gemycircularvirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus carib1; Caribou associated gemykrogvirus 1

Average proteome isoelectric point is 7.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A088G061|A0A088G061_9VIRU Cap OS=Caribou feces-associated gemycircularvirus OX=1542743 PE=4 SV=1
MM1 pKa = 7.6PRR3 pKa = 11.84FRR5 pKa = 11.84CRR7 pKa = 11.84ARR9 pKa = 11.84NFIITFPQVSEE20 pKa = 4.2DD21 pKa = 3.42VQPRR25 pKa = 11.84FDD27 pKa = 3.87AGTPFLEE34 pKa = 4.95RR35 pKa = 11.84VTADD39 pKa = 3.18YY40 pKa = 11.21GNPLCCRR47 pKa = 11.84LGRR50 pKa = 11.84EE51 pKa = 3.68RR52 pKa = 11.84HH53 pKa = 5.65ADD55 pKa = 3.35GGIHH59 pKa = 4.5YY60 pKa = 9.87HH61 pKa = 6.4VYY63 pKa = 10.76LGFDD67 pKa = 3.95KK68 pKa = 10.69IVSINSATAFDD79 pKa = 4.16YY80 pKa = 11.19FGAHH84 pKa = 6.18GNIKK88 pKa = 9.54SVRR91 pKa = 11.84RR92 pKa = 11.84TPNKK96 pKa = 9.45VFDD99 pKa = 4.09YY100 pKa = 10.56VGKK103 pKa = 10.6DD104 pKa = 2.82GDD106 pKa = 3.36IRR108 pKa = 11.84LEE110 pKa = 4.24HH111 pKa = 6.79GEE113 pKa = 4.17PPAEE117 pKa = 3.98ARR119 pKa = 11.84SRR121 pKa = 11.84DD122 pKa = 3.77GNDD125 pKa = 2.91SNKK128 pKa = 8.56WHH130 pKa = 7.59DD131 pKa = 4.65IISCNDD137 pKa = 3.12KK138 pKa = 11.08EE139 pKa = 4.63SFLSAVRR146 pKa = 11.84EE147 pKa = 3.89QAPRR151 pKa = 11.84DD152 pKa = 3.5WLLSNQRR159 pKa = 11.84ILEE162 pKa = 4.17YY163 pKa = 11.19ANLYY167 pKa = 9.43YY168 pKa = 10.03PEE170 pKa = 4.74EE171 pKa = 4.55KK172 pKa = 10.11PEE174 pKa = 3.83YY175 pKa = 8.23EE176 pKa = 4.29APHH179 pKa = 5.18TTVEE183 pKa = 4.02RR184 pKa = 11.84EE185 pKa = 3.86RR186 pKa = 11.84YY187 pKa = 9.07PEE189 pKa = 3.64ISEE192 pKa = 4.33WEE194 pKa = 3.98NQAAIGDD201 pKa = 4.17SRR203 pKa = 11.84PEE205 pKa = 3.6RR206 pKa = 4.62

Molecular weight: 23.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A088G061|A0A088G061_9VIRU Cap OS=Caribou feces-associated gemycircularvirus OX=1542743 PE=4 SV=1
MM1 pKa = 7.84GYY3 pKa = 10.16FEE5 pKa = 5.2EE6 pKa = 4.69NGYY9 pKa = 10.11SLSTGLHH16 pKa = 6.2SSRR19 pKa = 11.84QHH21 pKa = 7.05LYY23 pKa = 10.38RR24 pKa = 11.84PMAASRR30 pKa = 11.84FRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84TFRR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84STRR43 pKa = 11.84TPRR46 pKa = 11.84RR47 pKa = 11.84YY48 pKa = 8.85QRR50 pKa = 11.84RR51 pKa = 11.84RR52 pKa = 11.84SFRR55 pKa = 11.84RR56 pKa = 11.84RR57 pKa = 11.84PRR59 pKa = 11.84RR60 pKa = 11.84RR61 pKa = 11.84MTSRR65 pKa = 11.84RR66 pKa = 11.84VRR68 pKa = 11.84DD69 pKa = 3.03IASRR73 pKa = 11.84KK74 pKa = 9.87KK75 pKa = 10.05SDD77 pKa = 3.44TVFGATTNDD86 pKa = 3.4VQSTGQANIFAGTNYY101 pKa = 10.0FIWCPSWRR109 pKa = 11.84QRR111 pKa = 11.84RR112 pKa = 11.84TGSTDD117 pKa = 2.62EE118 pKa = 4.19HH119 pKa = 7.24VRR121 pKa = 11.84ANQEE125 pKa = 3.54VYY127 pKa = 9.82MRR129 pKa = 11.84GIKK132 pKa = 9.88DD133 pKa = 3.88RR134 pKa = 11.84IMVSATFSLIHH145 pKa = 6.51RR146 pKa = 11.84RR147 pKa = 11.84VCFWSHH153 pKa = 6.1RR154 pKa = 11.84RR155 pKa = 11.84IDD157 pKa = 3.47DD158 pKa = 3.45ARR160 pKa = 11.84PYY162 pKa = 11.12VFDD165 pKa = 4.24NPDD168 pKa = 3.51VIDD171 pKa = 4.04APQYY175 pKa = 8.93QRR177 pKa = 11.84RR178 pKa = 11.84PLAPIYY184 pKa = 7.42PTLDD188 pKa = 3.42SEE190 pKa = 4.12IFEE193 pKa = 4.45YY194 pKa = 10.83LFKK197 pKa = 10.78GTVGFDD203 pKa = 3.23YY204 pKa = 11.11SEE206 pKa = 4.07NSRR209 pKa = 11.84WDD211 pKa = 3.44TPLDD215 pKa = 3.53NKK217 pKa = 10.08RR218 pKa = 11.84VKK220 pKa = 10.23VVYY223 pKa = 10.04DD224 pKa = 3.35KK225 pKa = 11.31QYY227 pKa = 10.98TITPNYY233 pKa = 8.64AAPEE237 pKa = 4.19GAQFGKK243 pKa = 9.48TMTRR247 pKa = 11.84KK248 pKa = 9.27LWHH251 pKa = 6.67PINRR255 pKa = 11.84KK256 pKa = 8.72ILYY259 pKa = 10.39DD260 pKa = 4.21DD261 pKa = 4.76DD262 pKa = 5.34EE263 pKa = 5.39EE264 pKa = 5.35GADD267 pKa = 3.75VNGSGWSAQTPDD279 pKa = 3.29SLGNYY284 pKa = 8.44YY285 pKa = 10.93VLDD288 pKa = 3.7IFSTGQYY295 pKa = 9.91IEE297 pKa = 4.75GSTDD301 pKa = 3.28QVGTYY306 pKa = 8.49MPEE309 pKa = 3.95STSYY313 pKa = 8.42WHH315 pKa = 6.52EE316 pKa = 3.89ASS318 pKa = 3.63

Molecular weight: 37.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

524

206

318

262.0

30.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.107 ± 0.702

1.145 ± 0.476

7.061 ± 0.132

6.107 ± 1.864

4.771 ± 0.05

6.107 ± 0.122

2.672 ± 0.434

5.153 ± 0.402

3.244 ± 0.092

4.198 ± 0.392

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.527 ± 0.623

4.389 ± 0.568

5.725 ± 0.64

3.435 ± 0.603

12.214 ± 1.208

7.443 ± 0.967

6.107 ± 1.62

4.962 ± 0.064

1.908 ± 0.27

5.725 ± 0.521
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski