Loveridges garter snake virus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Bornaviridae; Orthobornavirus; Elapid 1 orthobornavirus

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A077ETD9|A0A077ETD9_9MONO Phosphoprotein OS=Loveridges garter snake virus 1 OX=1881951 GN=P PE=4 SV=1
MM1 pKa = 7.26ATRR4 pKa = 11.84RR5 pKa = 11.84DD6 pKa = 3.79NLVSPLEE13 pKa = 4.16EE14 pKa = 5.05DD15 pKa = 4.13PPSTAHH21 pKa = 6.1RR22 pKa = 11.84TRR24 pKa = 11.84SRR26 pKa = 11.84SPIRR30 pKa = 11.84RR31 pKa = 11.84KK32 pKa = 10.11KK33 pKa = 10.85SLDD36 pKa = 3.21KK37 pKa = 10.92RR38 pKa = 11.84LLGYY42 pKa = 9.89SVEE45 pKa = 4.07EE46 pKa = 4.34LVDD49 pKa = 3.64KK50 pKa = 10.97MSVNPGLIYY59 pKa = 10.75DD60 pKa = 4.49KK61 pKa = 10.82EE62 pKa = 4.05QLATGRR68 pKa = 11.84EE69 pKa = 4.13ALSSEE74 pKa = 4.2EE75 pKa = 5.0LIKK78 pKa = 10.87QLMGEE83 pKa = 4.28IKK85 pKa = 9.6TATEE89 pKa = 3.63EE90 pKa = 3.98RR91 pKa = 11.84KK92 pKa = 9.38IDD94 pKa = 3.59QEE96 pKa = 4.37VIQMKK101 pKa = 10.06FSHH104 pKa = 6.92LEE106 pKa = 3.89RR107 pKa = 11.84TLEE110 pKa = 4.11SYY112 pKa = 10.8FEE114 pKa = 4.52SVVTTQVEE122 pKa = 4.15ILEE125 pKa = 4.47KK126 pKa = 10.61LGQLDD131 pKa = 3.73YY132 pKa = 11.33SGSIRR137 pKa = 11.84QLGEE141 pKa = 3.44NMKK144 pKa = 10.43ILDD147 pKa = 4.09KK148 pKa = 10.98SLKK151 pKa = 10.43AVTASVTLMTEE162 pKa = 4.01KK163 pKa = 10.8VDD165 pKa = 4.08LLYY168 pKa = 11.36GKK170 pKa = 8.97MAVGTSNAPMIPSCPQPQSIYY191 pKa = 10.14PKK193 pKa = 10.05LPEE196 pKa = 4.14STATAPALDD205 pKa = 3.38IVFF208 pKa = 4.28

Molecular weight: 23.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A077ETD9|A0A077ETD9_9MONO Phosphoprotein OS=Loveridges garter snake virus 1 OX=1881951 GN=P PE=4 SV=1
MM1 pKa = 7.48APKK4 pKa = 10.17HH5 pKa = 5.99EE6 pKa = 4.44YY7 pKa = 9.98IEE9 pKa = 5.28LKK11 pKa = 10.81DD12 pKa = 3.77KK13 pKa = 11.33VIVPGWKK20 pKa = 8.38TLMLEE25 pKa = 3.68IDD27 pKa = 4.08FVGGASRR34 pKa = 11.84NQFVNFPLLSVKK46 pKa = 10.68DD47 pKa = 3.94DD48 pKa = 3.59FRR50 pKa = 11.84LPRR53 pKa = 11.84EE54 pKa = 3.84KK55 pKa = 10.71RR56 pKa = 11.84LINYY60 pKa = 7.48LTVDD64 pKa = 4.45AEE66 pKa = 4.39PSGHH70 pKa = 6.04GSVNIYY76 pKa = 10.99LLFSDD81 pKa = 5.88FLVQTLNSISVYY93 pKa = 10.34KK94 pKa = 10.78DD95 pKa = 3.26PIKK98 pKa = 9.78QHH100 pKa = 5.18MYY102 pKa = 10.38VRR104 pKa = 11.84LTEE107 pKa = 4.22NQSKK111 pKa = 9.91HH112 pKa = 6.19AINAAFDD119 pKa = 3.43VHH121 pKa = 7.17SYY123 pKa = 10.54RR124 pKa = 11.84LRR126 pKa = 11.84NVGVGPLGPDD136 pKa = 2.9IRR138 pKa = 11.84ATSPP142 pKa = 2.9

Molecular weight: 16.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3028

89

1713

504.7

56.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.209 ± 0.8

1.948 ± 0.527

5.02 ± 0.159

5.746 ± 0.826

3.732 ± 0.41

5.68 ± 0.538

2.048 ± 0.24

6.968 ± 0.574

5.35 ± 0.342

10.766 ± 0.521

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.543 ± 0.272

3.666 ± 0.77

5.218 ± 0.299

3.369 ± 0.4

5.68 ± 0.307

8.818 ± 0.611

6.011 ± 0.427

6.341 ± 0.631

1.387 ± 0.322

3.501 ± 0.405
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski