Torque teno mini virus 9

Taxonomy: Viruses; Anelloviridae; Betatorquevirus

Average proteome isoelectric point is 7.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9JG48|Q9JG48_9VIRU Uncharacterized protein OS=Torque teno mini virus 9 OX=687377 PE=4 SV=1
MM1 pKa = 7.31SRR3 pKa = 11.84YY4 pKa = 9.61IPTKK8 pKa = 9.06STLRR12 pKa = 11.84QKK14 pKa = 10.73KK15 pKa = 7.99LQWMNLIVHH24 pKa = 6.23GHH26 pKa = 7.38DD27 pKa = 4.74IFCDD31 pKa = 3.33CCKK34 pKa = 10.24PLEE37 pKa = 4.26CTIGTIINQEE47 pKa = 4.07PNLKK51 pKa = 10.61FNTEE55 pKa = 3.94EE56 pKa = 4.04KK57 pKa = 10.9NLLKK61 pKa = 10.67KK62 pKa = 10.66CLSTKK67 pKa = 10.83DD68 pKa = 3.22GDD70 pKa = 4.27AGAGAADD77 pKa = 3.69PDD79 pKa = 4.35GFGEE83 pKa = 4.57GDD85 pKa = 3.69LDD87 pKa = 4.63ALFTEE92 pKa = 5.51DD93 pKa = 4.86FGEE96 pKa = 4.41EE97 pKa = 3.91NTGG100 pKa = 3.27

Molecular weight: 11.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9JG47|Q9JG47_9VIRU Capsid protein OS=Torque teno mini virus 9 OX=687377 PE=3 SV=1
MM1 pKa = 7.54NNQPIPSPITSYY13 pKa = 10.73KK14 pKa = 9.03QLRR17 pKa = 11.84CRR19 pKa = 11.84VQQHH23 pKa = 6.26HH24 pKa = 7.37LNTSSGTLTNAEE36 pKa = 3.91EE37 pKa = 4.21SLQKK41 pKa = 10.35EE42 pKa = 4.32LQKK45 pKa = 11.09EE46 pKa = 3.97LLKK49 pKa = 10.23TSKK52 pKa = 9.96LKK54 pKa = 10.96QMFCQLQSQQPGVQQHH70 pKa = 4.87TEE72 pKa = 3.19KK73 pKa = 10.82HH74 pKa = 4.62KK75 pKa = 7.02THH77 pKa = 6.6RR78 pKa = 11.84RR79 pKa = 11.84HH80 pKa = 6.73RR81 pKa = 11.84PRR83 pKa = 11.84KK84 pKa = 7.13KK85 pKa = 7.9TKK87 pKa = 8.58HH88 pKa = 4.09SRR90 pKa = 11.84RR91 pKa = 11.84RR92 pKa = 11.84RR93 pKa = 11.84NYY95 pKa = 9.65SSSEE99 pKa = 3.73EE100 pKa = 4.29SKK102 pKa = 11.13NSSTNSSDD110 pKa = 4.81DD111 pKa = 3.79SYY113 pKa = 12.21SDD115 pKa = 3.25

Molecular weight: 13.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

898

100

683

299.3

34.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.563 ± 0.821

2.004 ± 0.936

4.232 ± 1.445

5.011 ± 1.114

3.675 ± 0.844

5.011 ± 1.595

2.561 ± 1.062

4.454 ± 0.835

7.795 ± 1.021

9.688 ± 0.56

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.45 ± 0.302

5.902 ± 0.074

6.125 ± 1.01

5.791 ± 1.67

6.57 ± 1.398

6.347 ± 2.765

8.797 ± 0.457

2.895 ± 0.802

2.339 ± 0.963

4.788 ± 1.575
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski