Rice stripe mosaic virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Cytorhabdovirus; Rice stripe mosaic cytorhabdovirus

Average proteome isoelectric point is 6.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1P8D6S4|A0A1P8D6S4_9RHAB Nucleocapsid protein OS=Rice stripe mosaic virus OX=1931356 PE=4 SV=1
MM1 pKa = 7.46SVPEE5 pKa = 4.09DD6 pKa = 3.84TPFRR10 pKa = 11.84SYY12 pKa = 11.63SSIFDD17 pKa = 4.04DD18 pKa = 4.2SDD20 pKa = 3.69FVQPQPMSFKK30 pKa = 9.59ATKK33 pKa = 9.8EE34 pKa = 4.17SEE36 pKa = 4.37SLPEE40 pKa = 4.01TEE42 pKa = 4.98KK43 pKa = 11.28EE44 pKa = 4.21DD45 pKa = 3.38MSTEE49 pKa = 4.05YY50 pKa = 10.74LSEE53 pKa = 4.07PLRR56 pKa = 11.84TKK58 pKa = 10.31SGKK61 pKa = 9.53KK62 pKa = 8.14NRR64 pKa = 11.84RR65 pKa = 11.84RR66 pKa = 11.84KK67 pKa = 10.45GKK69 pKa = 9.21DD70 pKa = 2.95LKK72 pKa = 11.39SLFTQEE78 pKa = 4.41AGLPAPEE85 pKa = 5.01ADD87 pKa = 3.37SVLPEE92 pKa = 3.95SSPYY96 pKa = 10.95EE97 pKa = 3.95NDD99 pKa = 3.15NAQLEE104 pKa = 4.5LPKK107 pKa = 10.41PILKK111 pKa = 9.66TSDD114 pKa = 3.1APVFLRR120 pKa = 11.84EE121 pKa = 4.01KK122 pKa = 10.69DD123 pKa = 3.5LSKK126 pKa = 11.11EE127 pKa = 3.48FAAACKK133 pKa = 10.03TNGILPRR140 pKa = 11.84DD141 pKa = 3.53EE142 pKa = 4.43WKK144 pKa = 10.92SSVAAKK150 pKa = 9.57YY151 pKa = 9.65HH152 pKa = 5.7AEE154 pKa = 3.97EE155 pKa = 4.43GKK157 pKa = 7.84MTKK160 pKa = 9.76RR161 pKa = 11.84DD162 pKa = 2.87ISLIVFGMEE171 pKa = 3.9LYY173 pKa = 10.37KK174 pKa = 10.42RR175 pKa = 11.84YY176 pKa = 9.82NVEE179 pKa = 4.27SEE181 pKa = 4.03VSTLFTSLVTEE192 pKa = 4.12LQGIKK197 pKa = 10.12VAAKK201 pKa = 9.15EE202 pKa = 4.02LNDD205 pKa = 3.5TRR207 pKa = 11.84EE208 pKa = 4.27VLTKK212 pKa = 10.08IPGEE216 pKa = 3.76IVSAVKK222 pKa = 10.61AGVKK226 pKa = 9.86EE227 pKa = 4.11GTEE230 pKa = 3.64MGMDD234 pKa = 3.94YY235 pKa = 10.82IEE237 pKa = 4.6TRR239 pKa = 11.84TKK241 pKa = 10.38VAPKK245 pKa = 9.91SAPKK249 pKa = 10.32VDD251 pKa = 3.08ISKK254 pKa = 10.31PMSSKK259 pKa = 10.28MMEE262 pKa = 4.16QQDD265 pKa = 3.77EE266 pKa = 4.5SSDD269 pKa = 3.5EE270 pKa = 4.26SSDD273 pKa = 3.77NEE275 pKa = 4.19SEE277 pKa = 4.14EE278 pKa = 4.29SEE280 pKa = 4.25EE281 pKa = 4.3EE282 pKa = 4.19SFEE285 pKa = 4.02TKK287 pKa = 10.39AAIFLALIKK296 pKa = 10.73VPEE299 pKa = 4.17EE300 pKa = 3.8EE301 pKa = 3.89RR302 pKa = 11.84DD303 pKa = 3.61NAIVLMALRR312 pKa = 11.84AVISDD317 pKa = 3.91SEE319 pKa = 4.37LNQAIRR325 pKa = 11.84NDD327 pKa = 4.27RR328 pKa = 11.84ISSSVADD335 pKa = 4.2MYY337 pKa = 10.43HH338 pKa = 6.17QKK340 pKa = 10.32ISDD343 pKa = 3.7KK344 pKa = 10.98ARR346 pKa = 11.84EE347 pKa = 3.98LMGKK351 pKa = 10.29GKK353 pKa = 8.22TNKK356 pKa = 9.56RR357 pKa = 11.84AKK359 pKa = 9.6QPKK362 pKa = 7.39SSKK365 pKa = 10.03YY366 pKa = 10.53ASDD369 pKa = 4.44YY370 pKa = 11.43YY371 pKa = 11.44DD372 pKa = 4.1DD373 pKa = 4.87ALL375 pKa = 5.77

Molecular weight: 41.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1P8D6S6|A0A1P8D6S6_9RHAB Matrix protein OS=Rice stripe mosaic virus OX=1931356 PE=4 SV=1
MM1 pKa = 7.44EE2 pKa = 5.86FNWPWGQNSEE12 pKa = 4.37TEE14 pKa = 3.71ITKK17 pKa = 10.16NLRR20 pKa = 11.84FEE22 pKa = 5.33DD23 pKa = 3.8IKK25 pKa = 11.67VMAIIILVWVKK36 pKa = 10.72CLLIYY41 pKa = 10.29HH42 pKa = 6.92FKK44 pKa = 10.77RR45 pKa = 11.84KK46 pKa = 8.95IRR48 pKa = 11.84RR49 pKa = 11.84LRR51 pKa = 11.84SLLIKK56 pKa = 10.7GSSQWVLHH64 pKa = 6.44DD65 pKa = 3.73AA66 pKa = 4.44

Molecular weight: 8.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

3885

66

2066

555.0

62.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.255 ± 1.298

1.57 ± 0.459

5.663 ± 0.393

6.795 ± 0.905

3.604 ± 0.198

5.122 ± 0.471

1.673 ± 0.433

6.461 ± 0.738

7.027 ± 1.47

9.704 ± 1.001

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.192 ± 0.224

3.629 ± 0.132

4.633 ± 0.39

2.754 ± 0.169

5.431 ± 0.762

8.623 ± 0.84

6.435 ± 0.735

5.92 ± 0.467

1.493 ± 0.339

4.015 ± 0.245
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski