Synchytrium endobioticum

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Chytridiomycota; Chytridiomycota incertae sedis; Chytridiomycetes; Synchytriales; Synchytriaceae; Synchytrium

Average proteome isoelectric point is 6.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7895 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A507DGB9|A0A507DGB9_9FUNG WD_REPEATS_REGION domain-containing protein OS=Synchytrium endobioticum OX=286115 GN=SeLEV6574_g01199 PE=4 SV=1
MM1 pKa = 7.15LTLRR5 pKa = 11.84QTVVEE10 pKa = 4.37LIIMVMLMSSNVLLSPVPMGACFSSTRR37 pKa = 11.84GSAEE41 pKa = 3.85VVAPDD46 pKa = 3.59YY47 pKa = 11.33PNDD50 pKa = 3.27VVAAHH55 pKa = 5.68YY56 pKa = 10.52HH57 pKa = 5.61NNDD60 pKa = 3.27DD61 pKa = 4.32RR62 pKa = 11.84TDD64 pKa = 3.39SSDD67 pKa = 3.57DD68 pKa = 3.45LRR70 pKa = 11.84GVNIPFSDD78 pKa = 4.02GEE80 pKa = 4.23TDD82 pKa = 3.49GPEE85 pKa = 4.9DD86 pKa = 3.84YY87 pKa = 10.4FSPSSDD93 pKa = 2.85PVVSTEE99 pKa = 3.98VSSDD103 pKa = 3.16VCMTICQSRR112 pKa = 11.84STSTVTGSVSLVV124 pKa = 3.14

Molecular weight: 13.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A507DSE5|A0A507DSE5_9FUNG RRM domain-containing protein OS=Synchytrium endobioticum OX=286115 GN=SeMB42_g00139 PE=3 SV=1
MM1 pKa = 7.47LRR3 pKa = 11.84AQHH6 pKa = 6.33EE7 pKa = 4.51PTVQRR12 pKa = 11.84SPTISIITPKK22 pKa = 9.73MLSEE26 pKa = 3.93RR27 pKa = 11.84ATLNRR32 pKa = 11.84HH33 pKa = 4.71PAKK36 pKa = 10.16PKK38 pKa = 10.55APTVPLSRR46 pKa = 11.84TPARR50 pKa = 11.84TPVALSASTSISSTRR65 pKa = 11.84AAPARR70 pKa = 11.84SAPARR75 pKa = 11.84SEE77 pKa = 3.76NCATSKK83 pKa = 11.14ASFASTPRR91 pKa = 11.84FSSAVTGRR99 pKa = 11.84EE100 pKa = 3.65RR101 pKa = 11.84LTGKK105 pKa = 9.53HH106 pKa = 5.78APAATLRR113 pKa = 11.84AAIQEE118 pKa = 4.01PFMGKK123 pKa = 8.23NHH125 pKa = 5.53STAFGTVYY133 pKa = 10.05TRR135 pKa = 11.84GGIPCRR141 pKa = 11.84LQHH144 pKa = 6.73GSVQHH149 pKa = 6.71RR150 pKa = 11.84IQWTTSPPSLSFPTLLPLFIVGLLEE175 pKa = 3.55THH177 pKa = 5.87PQYY180 pKa = 11.23RR181 pKa = 11.84FIAHH185 pKa = 6.06QGLMEE190 pKa = 5.59CISAPNCGDD199 pKa = 4.38SIQQAWTVAVPPLRR213 pKa = 11.84GVLGNSGDD221 pKa = 3.57KK222 pKa = 10.98GALLTALKK230 pKa = 10.1ALAAMIPNLSIDD242 pKa = 4.18SLLSACGMLLPPLSRR257 pKa = 11.84LAVSKK262 pKa = 10.83DD263 pKa = 3.24RR264 pKa = 11.84EE265 pKa = 4.52VNDD268 pKa = 3.79ATHH271 pKa = 6.47SMLRR275 pKa = 11.84TLEE278 pKa = 3.98EE279 pKa = 3.77RR280 pKa = 11.84ALEE283 pKa = 4.02YY284 pKa = 10.38PQVLKK289 pKa = 10.79LIKK292 pKa = 10.36ARR294 pKa = 11.84IPTYY298 pKa = 10.31TSIRR302 pKa = 11.84SCC304 pKa = 3.89

Molecular weight: 32.69 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7895

0

7895

3746747

8

4874

474.6

52.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.44 ± 0.028

1.393 ± 0.011

5.793 ± 0.018

5.644 ± 0.027

3.382 ± 0.014

5.737 ± 0.021

2.729 ± 0.013

5.205 ± 0.016

5.153 ± 0.023

9.192 ± 0.029

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.385 ± 0.01

4.019 ± 0.015

5.774 ± 0.027

3.972 ± 0.019

6.02 ± 0.02

8.705 ± 0.032

6.081 ± 0.019

6.409 ± 0.018

1.144 ± 0.008

2.817 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski