Limimaricola soesokkakensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Limimaricola

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3683 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1X6ZMF2|A0A1X6ZMF2_9RHOB 4 4'-diaponeurosporenoate glycosyltransferase OS=Limimaricola soesokkakensis OX=1343159 GN=crtQ PE=4 SV=1
MM1 pKa = 7.88PEE3 pKa = 4.13LTSSLTRR10 pKa = 11.84GASLSTAVLAAIAGFILPQVSLADD34 pKa = 3.53SPVIQTEE41 pKa = 4.43GPVIYY46 pKa = 10.59LSDD49 pKa = 4.02NLDD52 pKa = 3.41EE53 pKa = 4.43EE54 pKa = 5.87ANLGWCIDD62 pKa = 3.59TEE64 pKa = 4.57GRR66 pKa = 11.84GEE68 pKa = 3.99SDD70 pKa = 2.94QLHH73 pKa = 5.87AHH75 pKa = 5.3SCKK78 pKa = 9.4PTGDD82 pKa = 3.98DD83 pKa = 3.76VLFSYY88 pKa = 10.73APEE91 pKa = 4.02SEE93 pKa = 4.57RR94 pKa = 11.84IEE96 pKa = 4.37SATYY100 pKa = 10.54AGLCMAYY107 pKa = 9.98NAPDD111 pKa = 4.04DD112 pKa = 4.06EE113 pKa = 4.85EE114 pKa = 5.37NPFGLIACDD123 pKa = 3.74DD124 pKa = 3.83TDD126 pKa = 3.91PNQRR130 pKa = 11.84FEE132 pKa = 4.55YY133 pKa = 9.34DD134 pKa = 3.22TEE136 pKa = 4.19TGQIHH141 pKa = 7.01LGSDD145 pKa = 3.13ATQCVTVSAQIDD157 pKa = 3.73DD158 pKa = 4.49AGPFQSRR165 pKa = 11.84DD166 pKa = 3.55LLLAACDD173 pKa = 4.1EE174 pKa = 4.64LDD176 pKa = 3.87QSFKK180 pKa = 9.99TWTVRR185 pKa = 11.84DD186 pKa = 3.61

Molecular weight: 20.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1X6YHN9|A0A1X6YHN9_9RHOB Inner membrane protein YebE OS=Limimaricola soesokkakensis OX=1343159 GN=yebE PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84VRR12 pKa = 11.84KK13 pKa = 9.25SRR15 pKa = 11.84HH16 pKa = 3.83GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.81IINARR34 pKa = 11.84RR35 pKa = 11.84AQGRR39 pKa = 11.84KK40 pKa = 9.01VLSAA44 pKa = 3.99

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3683

0

3683

1159187

29

5820

314.7

34.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.139 ± 0.068

0.828 ± 0.015

5.932 ± 0.041

6.545 ± 0.041

3.458 ± 0.029

9.092 ± 0.05

2.072 ± 0.023

4.859 ± 0.027

2.562 ± 0.037

10.304 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.684 ± 0.023

2.176 ± 0.026

5.362 ± 0.035

2.88 ± 0.019

7.635 ± 0.058

4.865 ± 0.028

5.112 ± 0.03

7.073 ± 0.044

1.411 ± 0.019

2.012 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski