Ferrovibrio terrae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Ferrovibrio

Average proteome isoelectric point is 6.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4107 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A516H517|A0A516H517_9PROT Protein TonB OS=Ferrovibrio terrae OX=2594003 GN=FNB15_16760 PE=3 SV=1
MM1 pKa = 7.57SPATDD6 pKa = 3.43SDD8 pKa = 3.93SGGEE12 pKa = 3.97KK13 pKa = 9.5MAVITGDD20 pKa = 3.1ATDD23 pKa = 3.57NVLNGTAAADD33 pKa = 3.5QIYY36 pKa = 10.08GLNGNDD42 pKa = 3.57TLTGGNGIDD51 pKa = 4.76LLDD54 pKa = 4.84GGDD57 pKa = 4.61GDD59 pKa = 4.71DD60 pKa = 4.47SLYY63 pKa = 11.29GGNQNDD69 pKa = 4.21TLNGGNGIDD78 pKa = 3.2TAVFEE83 pKa = 4.66KK84 pKa = 10.72PIGRR88 pKa = 11.84YY89 pKa = 9.55RR90 pKa = 11.84ITYY93 pKa = 8.01NNGVITVDD101 pKa = 3.27AQSGYY106 pKa = 11.03EE107 pKa = 4.44DD108 pKa = 4.2VDD110 pKa = 3.74TLTGMEE116 pKa = 4.01KK117 pKa = 10.66LKK119 pKa = 11.13FNGLVYY125 pKa = 10.76DD126 pKa = 3.92FTGWTGGPLPEE137 pKa = 4.23PTMPAGTVYY146 pKa = 9.25GTEE149 pKa = 3.85GHH151 pKa = 5.77EE152 pKa = 4.35TLTGTGGVDD161 pKa = 3.4YY162 pKa = 11.13LHH164 pKa = 7.05GLGGDD169 pKa = 3.58DD170 pKa = 4.66VMIGGAGGDD179 pKa = 3.49ILVGGSGNDD188 pKa = 3.3TASYY192 pKa = 9.85AGSSAGVTVSLEE204 pKa = 4.2TGLGFYY210 pKa = 10.91GDD212 pKa = 3.79AANDD216 pKa = 3.51VLHH219 pKa = 6.77GFEE222 pKa = 4.44NLQGSSFNDD231 pKa = 3.33TLTGNGGDD239 pKa = 4.12NIFISSGGVDD249 pKa = 5.26DD250 pKa = 3.82ITGGAGVDD258 pKa = 3.05WVDD261 pKa = 3.34YY262 pKa = 11.3SDD264 pKa = 3.36IVKK267 pKa = 9.37PAGMTGMFFQRR278 pKa = 11.84GTPTNIASYY287 pKa = 9.81FYY289 pKa = 10.27NASINPFKK297 pKa = 10.53DD298 pKa = 2.77TLRR301 pKa = 11.84QVEE304 pKa = 4.42GVRR307 pKa = 11.84GSAYY311 pKa = 10.55DD312 pKa = 3.67DD313 pKa = 3.66VYY315 pKa = 11.5MNILTSDD322 pKa = 3.57DD323 pKa = 3.83MFEE326 pKa = 4.74GGAGADD332 pKa = 3.19IFDD335 pKa = 3.97GRR337 pKa = 11.84GGNDD341 pKa = 3.08TLVYY345 pKa = 8.12THH347 pKa = 6.82SAAGVNVNLATGAASGGDD365 pKa = 3.28ATGDD369 pKa = 3.53QFTGSYY375 pKa = 7.2VWRR378 pKa = 11.84GTTRR382 pKa = 11.84NLAGATNLSGSEE394 pKa = 4.12HH395 pKa = 7.42ADD397 pKa = 3.24TLTGSSVANVLRR409 pKa = 11.84GADD412 pKa = 3.48GDD414 pKa = 3.89DD415 pKa = 3.53TLRR418 pKa = 11.84GDD420 pKa = 4.51GGNDD424 pKa = 3.39TLDD427 pKa = 3.52GGAGVDD433 pKa = 3.14IAVYY437 pKa = 10.46ALSLNNYY444 pKa = 6.86TISYY448 pKa = 9.23NSGAITVAANIGTEE462 pKa = 4.28GTDD465 pKa = 3.0TLTGIEE471 pKa = 4.63KK472 pKa = 10.82LLFANGTLDD481 pKa = 3.45LTEE484 pKa = 4.17WTGGPLPPLLGPNDD498 pKa = 3.4IMGSSGDD505 pKa = 3.65NVLTGTAAGQSIYY518 pKa = 11.23GMAGNDD524 pKa = 3.99SISGAGGNDD533 pKa = 3.22VLTGGDD539 pKa = 3.52GSDD542 pKa = 3.35TYY544 pKa = 11.54LVARR548 pKa = 11.84GDD550 pKa = 3.91GVDD553 pKa = 5.37DD554 pKa = 3.96IVQAGITDD562 pKa = 3.74AAGTTDD568 pKa = 3.5AVLFGSGVSYY578 pKa = 10.67DD579 pKa = 3.77QLWFRR584 pKa = 11.84QVGNDD589 pKa = 3.93LRR591 pKa = 11.84IDD593 pKa = 4.04VIGEE597 pKa = 4.15SASSVLLKK605 pKa = 10.3SWYY608 pKa = 8.16TDD610 pKa = 2.8STRR613 pKa = 11.84RR614 pKa = 11.84VDD616 pKa = 5.15SIQTTDD622 pKa = 3.26GSHH625 pKa = 6.25SLSAANVQALVDD637 pKa = 3.91AMATYY642 pKa = 7.6TQPGTGDD649 pKa = 3.5FTLSPQLASDD659 pKa = 4.6LAPVFATTWAA669 pKa = 3.56

Molecular weight: 67.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A516H194|A0A516H194_9PROT 3-alpha 7-alpha 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase OS=Ferrovibrio terrae OX=2594003 GN=FNB15_09755 PE=4 SV=1
MM1 pKa = 7.74SKK3 pKa = 8.95RR4 pKa = 11.84TYY6 pKa = 10.27QPSKK10 pKa = 9.73LVRR13 pKa = 11.84KK14 pKa = 9.15RR15 pKa = 11.84RR16 pKa = 11.84HH17 pKa = 4.42GFRR20 pKa = 11.84ARR22 pKa = 11.84MATVGGRR29 pKa = 11.84NVIASRR35 pKa = 11.84RR36 pKa = 11.84AQGRR40 pKa = 11.84KK41 pKa = 9.31KK42 pKa = 10.65LSAA45 pKa = 3.91

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4107

0

4107

1303169

29

3226

317.3

34.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.612 ± 0.055

0.84 ± 0.011

5.528 ± 0.028

5.232 ± 0.034

3.649 ± 0.024

8.481 ± 0.039

2.044 ± 0.021

5.168 ± 0.028

3.698 ± 0.035

10.576 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.628 ± 0.02

2.697 ± 0.02

5.192 ± 0.038

3.614 ± 0.032

6.844 ± 0.038

5.073 ± 0.027

5.284 ± 0.054

7.229 ± 0.032

1.339 ± 0.015

2.271 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski