Suffolk virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Jingchuvirales; Chuviridae; Mivirus; Mivirus suffolkense

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0A1G6U7|A0A0A1G6U7_9VIRU Large structural protein OS=Suffolk virus OX=1577137 PE=4 SV=1
MM1 pKa = 6.73STSGRR6 pKa = 11.84SLSSCMLWVILCVLGGGQQAEE27 pKa = 4.3GLVGFDD33 pKa = 3.64CTGQAVNVTAVSLSWIQKK51 pKa = 9.34CPVAEE56 pKa = 4.55GAQGTIVEE64 pKa = 5.42FIQLVQEE71 pKa = 4.4RR72 pKa = 11.84NVEE75 pKa = 4.05AVRR78 pKa = 11.84VKK80 pKa = 10.36ACLVEE85 pKa = 4.55RR86 pKa = 11.84SYY88 pKa = 11.76LLQHH92 pKa = 6.89CGMHH96 pKa = 5.76SHH98 pKa = 7.01SSMTFNGLVTSEE110 pKa = 3.9ILRR113 pKa = 11.84VPKK116 pKa = 9.66EE117 pKa = 4.02ACDD120 pKa = 3.63ALHH123 pKa = 7.1LYY125 pKa = 10.9GSFHH129 pKa = 6.29TSGGKK134 pKa = 9.64VLTGFAANTTTVVPVVEE151 pKa = 4.66MGVIDD156 pKa = 5.4AGSATCKK163 pKa = 10.46GATFTLNGATYY174 pKa = 9.54TDD176 pKa = 3.55VVMQSSYY183 pKa = 11.21KK184 pKa = 8.77VTLRR188 pKa = 11.84TEE190 pKa = 4.39RR191 pKa = 11.84AQLDD195 pKa = 3.99VATSTVRR202 pKa = 11.84LSSGYY207 pKa = 8.12SHH209 pKa = 7.98PFQAHH214 pKa = 5.83SGFDD218 pKa = 3.52PEE220 pKa = 5.68LGQTYY225 pKa = 9.03WSSEE229 pKa = 3.91GVGVKK234 pKa = 10.29CSPTSYY240 pKa = 9.74IVVYY244 pKa = 10.37EE245 pKa = 4.18GDD247 pKa = 2.99ATIYY251 pKa = 10.51KK252 pKa = 9.84NRR254 pKa = 11.84EE255 pKa = 3.75GQRR258 pKa = 11.84TLIVNTTTQVMAVGLRR274 pKa = 11.84DD275 pKa = 3.72EE276 pKa = 4.56TTLCHH281 pKa = 6.72QEE283 pKa = 3.89ATEE286 pKa = 4.15TDD288 pKa = 3.42HH289 pKa = 7.34PRR291 pKa = 11.84LFMVRR296 pKa = 11.84PLRR299 pKa = 11.84AGGPRR304 pKa = 11.84FYY306 pKa = 10.45FQKK309 pKa = 11.09GSMDD313 pKa = 3.7PKK315 pKa = 10.69EE316 pKa = 4.19VDD318 pKa = 2.99LFLYY322 pKa = 9.58TNSKK326 pKa = 9.61LVYY329 pKa = 9.88VEE331 pKa = 3.64QHH333 pKa = 6.51LARR336 pKa = 11.84EE337 pKa = 4.24LTSVYY342 pKa = 11.06LHH344 pKa = 6.3FQKK347 pKa = 10.64QMCDD351 pKa = 3.11VNHH354 pKa = 7.18RR355 pKa = 11.84LLTHH359 pKa = 6.56LTTLAMVAPEE369 pKa = 4.05EE370 pKa = 4.23FAWTYY375 pKa = 6.94TQQPGITAVLRR386 pKa = 11.84GEE388 pKa = 4.05VVYY391 pKa = 9.37MVKK394 pKa = 10.35CAPVSVDD401 pKa = 3.12YY402 pKa = 10.46RR403 pKa = 11.84ASSACFQEE411 pKa = 5.13IPVTYY416 pKa = 10.51NGTQVFLKK424 pKa = 9.5PRR426 pKa = 11.84SRR428 pKa = 11.84IITTYY433 pKa = 9.14GTEE436 pKa = 4.1IDD438 pKa = 4.71CSPLAPPLFFLNGNWVSFAPHH459 pKa = 6.56PTHH462 pKa = 6.66VLPPQVLNASFQAEE476 pKa = 4.09WAYY479 pKa = 9.78TSPPHH484 pKa = 6.94LISAGLYY491 pKa = 9.28SQSLLEE497 pKa = 4.3KK498 pKa = 10.09YY499 pKa = 9.49QRR501 pKa = 11.84QLMFPIEE508 pKa = 3.96RR509 pKa = 11.84TAIEE513 pKa = 4.16TTMAASMAGLNVDD526 pKa = 3.81HH527 pKa = 6.98QGLDD531 pKa = 2.98ASGLLRR537 pKa = 11.84QSGLDD542 pKa = 3.39KK543 pKa = 10.98LQTSFMEE550 pKa = 5.79RR551 pKa = 11.84IYY553 pKa = 10.81GWWWTFSVNLAGVMGVIFVITAIKK577 pKa = 10.47AIGNVVLNATFLYY590 pKa = 9.11KK591 pKa = 10.49TFGCGFRR598 pKa = 11.84MFAMFWGTLAKK609 pKa = 10.46YY610 pKa = 10.5LLIKK614 pKa = 10.77VPTNPSRR621 pKa = 11.84DD622 pKa = 3.78DD623 pKa = 3.69VEE625 pKa = 6.36AGTPSPPTSSPTPCSSGACNEE646 pKa = 3.98EE647 pKa = 3.77ATILISPPSSHH658 pKa = 7.57FYY660 pKa = 10.21PSVSYY665 pKa = 10.57RR666 pKa = 11.84PPGATAPIII675 pKa = 3.95

Molecular weight: 73.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0A1G690|A0A0A1G690_9VIRU Putative glycoprotein OS=Suffolk virus OX=1577137 PE=4 SV=1
MM1 pKa = 7.94GDD3 pKa = 3.65PVVQPVVVEE12 pKa = 4.52AGARR16 pKa = 11.84AQLQAAPPGFWNPRR30 pKa = 11.84DD31 pKa = 3.47TEE33 pKa = 4.19YY34 pKa = 11.0QRR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 10.15AFGGIVATDD47 pKa = 3.38QLTGANCDD55 pKa = 4.04FLAGTSDD62 pKa = 3.58DD63 pKa = 5.02AIFPRR68 pKa = 11.84ITIMARR74 pKa = 11.84GEE76 pKa = 4.22AYY78 pKa = 10.54LKK80 pKa = 10.71AITDD84 pKa = 3.62IEE86 pKa = 4.45KK87 pKa = 9.45ATLTIAIANAIAPNMTALALPPAEE111 pKa = 3.9ASARR115 pKa = 11.84GRR117 pKa = 11.84TQVVEE122 pKa = 4.85FLRR125 pKa = 11.84QEE127 pKa = 3.72VGKK130 pKa = 9.86NVKK133 pKa = 9.09DD134 pKa = 3.51LCVITPQLWASARR147 pKa = 11.84AAEE150 pKa = 4.9GPLHH154 pKa = 7.03RR155 pKa = 11.84IPWLCDD161 pKa = 3.72FNGLPTLVRR170 pKa = 11.84PADD173 pKa = 3.67GTDD176 pKa = 3.24TVGHH180 pKa = 6.1YY181 pKa = 10.96NSILAFLLTYY191 pKa = 6.63PTPYY195 pKa = 9.57ISNIGTRR202 pKa = 11.84LYY204 pKa = 10.84AILYY208 pKa = 9.81VSLAKK213 pKa = 10.39QGTISRR219 pKa = 11.84GKK221 pKa = 10.24LEE223 pKa = 5.8KK224 pKa = 10.23INQDD228 pKa = 3.36LAVNMGFEE236 pKa = 4.55VNMTEE241 pKa = 4.22EE242 pKa = 4.74VITYY246 pKa = 7.6TYY248 pKa = 10.0QQIGTKK254 pKa = 9.5IPHH257 pKa = 6.32NALEE261 pKa = 4.23IMFNTMRR268 pKa = 11.84DD269 pKa = 3.2HH270 pKa = 5.94MQNLSLRR277 pKa = 11.84MQVTLQQAAGTGLTGLQIIKK297 pKa = 10.16RR298 pKa = 11.84AILEE302 pKa = 4.27HH303 pKa = 6.98PAFPWGKK310 pKa = 9.12LAQMLPAEE318 pKa = 4.6GPKK321 pKa = 10.4VIAAFEE327 pKa = 4.14AVGNDD332 pKa = 3.43PFYY335 pKa = 11.54GFLPDD340 pKa = 4.73LGPAKK345 pKa = 9.21STNYY349 pKa = 9.86ARR351 pKa = 11.84YY352 pKa = 8.73VWVCQRR358 pKa = 11.84LLRR361 pKa = 11.84KK362 pKa = 9.81FNAEE366 pKa = 3.92DD367 pKa = 3.47EE368 pKa = 4.5RR369 pKa = 11.84TLRR372 pKa = 11.84NYY374 pKa = 10.44KK375 pKa = 10.39GGVRR379 pKa = 11.84GIPNQPLFEE388 pKa = 4.33EE389 pKa = 5.78LIDD392 pKa = 4.2SYY394 pKa = 11.72SPPAPEE400 pKa = 4.38AAVSADD406 pKa = 3.73FVALGVNITALARR419 pKa = 11.84SCRR422 pKa = 11.84ALQSS426 pKa = 3.36

Molecular weight: 46.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

3382

113

2168

845.5

94.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.658 ± 1.353

2.07 ± 0.356

4.879 ± 0.824

5.707 ± 0.441

3.578 ± 0.471

6.062 ± 0.668

2.543 ± 0.402

4.967 ± 0.522

4.021 ± 0.469

10.408 ± 1.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.602 ± 0.151

3.459 ± 0.474

5.795 ± 1.001

3.637 ± 0.582

6.091 ± 0.729

5.943 ± 0.93

7.126 ± 0.739

7.895 ± 0.584

1.626 ± 0.283

3.933 ± 0.277
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski