Arcanobacterium sp. S3PF19

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Actinomycetales; Actinomycetaceae; Arcanobacterium; unclassified Arcanobacterium

Average proteome isoelectric point is 7.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1003 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A095X7C1|A0A095X7C1_9ACTO Uncharacterized protein OS=Arcanobacterium sp. S3PF19 OX=1219585 GN=HMPREF1631_04110 PE=4 SV=1
MM1 pKa = 7.41GFDD4 pKa = 3.34ACAPLNLRR12 pKa = 11.84RR13 pKa = 11.84GCFVGGDD20 pKa = 3.8GFALANFEE28 pKa = 4.32LVEE31 pKa = 4.02ALVVVVLVLGVMSVTGDD48 pKa = 3.61GLVDD52 pKa = 3.48EE53 pKa = 5.31FGGYY57 pKa = 10.39LDD59 pKa = 4.89FACLLL64 pKa = 4.01

Molecular weight: 6.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A095ZAH6|A0A095ZAH6_9ACTO Elongation factor Ts OS=Arcanobacterium sp. S3PF19 OX=1219585 GN=tsf PE=3 SV=1
MM1 pKa = 6.54GTVRR5 pKa = 11.84GSAALCGHH13 pKa = 6.17YY14 pKa = 10.72VPLSANRR21 pKa = 11.84AKK23 pKa = 10.57KK24 pKa = 10.46SVGSCVPAGKK34 pKa = 7.98PTSEE38 pKa = 4.05PARR41 pKa = 11.84VKK43 pKa = 10.58LRR45 pKa = 11.84AVHH48 pKa = 6.47SDD50 pKa = 2.86EE51 pKa = 6.07AYY53 pKa = 10.38FPQVPAAGAGGRR65 pKa = 11.84EE66 pKa = 3.87DD67 pKa = 3.7AAPNRR72 pKa = 11.84IVRR75 pKa = 11.84PDD77 pKa = 3.04RR78 pKa = 11.84RR79 pKa = 11.84KK80 pKa = 9.06SRR82 pKa = 11.84RR83 pKa = 11.84GIVLAVADD91 pKa = 4.81GFAGEE96 pKa = 4.15QFGVSAVRR104 pKa = 11.84MPDD107 pKa = 3.53LNRR110 pKa = 11.84MPRR113 pKa = 11.84RR114 pKa = 11.84RR115 pKa = 11.84PVSPVRR121 pKa = 11.84NSGGVSDD128 pKa = 5.18DD129 pKa = 3.55VSFLRR134 pKa = 11.84SVVALCMSPAVKK146 pKa = 9.92IAFTLLFFLLLFGLAVSCIDD166 pKa = 3.98LLFGSVIYY174 pKa = 8.02PTAGSAGPAASPLLLL189 pKa = 4.82

Molecular weight: 19.79 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1003

0

1003

334713

51

2285

333.7

36.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.227 ± 0.096

1.088 ± 0.024

5.232 ± 0.058

6.225 ± 0.085

3.624 ± 0.056

8.332 ± 0.078

1.911 ± 0.033

5.384 ± 0.065

4.706 ± 0.062

9.609 ± 0.079

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.171 ± 0.034

3.122 ± 0.048

4.766 ± 0.061

3.042 ± 0.042

6.846 ± 0.084

5.809 ± 0.059

5.536 ± 0.05

7.61 ± 0.071

1.175 ± 0.034

2.583 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski