Ranid herpesvirus 3

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Alloherpesviridae; Batrachovirus

Average proteome isoelectric point is 7.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 186 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1X9T5L2|A0A1X9T5L2_9VIRU C-type lectin protein OS=Ranid herpesvirus 3 OX=1987509 PE=4 SV=1
MM1 pKa = 7.39SFAVDD6 pKa = 3.51DD7 pKa = 4.25RR8 pKa = 11.84LVSVVVIVGTAVFTVVMVTVGIGAFVVVVTICVAVALVVTLAFVVAIIVAVALFVTLAFVVAIIVAVEE76 pKa = 3.74LVITLAFVVAIVALMVVLIAEE97 pKa = 4.68AVTSVSSVLVDD108 pKa = 3.56GTTVEE113 pKa = 4.26GFVMGKK119 pKa = 10.25GDD121 pKa = 3.79PTSVQNDD128 pKa = 3.34EE129 pKa = 4.16PAFMISKK136 pKa = 10.29

Molecular weight: 13.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1X9T569|A0A1X9T569_9VIRU Uncharacterized protein OS=Ranid herpesvirus 3 OX=1987509 PE=4 SV=1
MM1 pKa = 7.21VSKK4 pKa = 10.69HH5 pKa = 5.59PPAYY9 pKa = 9.66SSGFFEE15 pKa = 4.24HH16 pKa = 7.45RR17 pKa = 11.84AMQSSLHH24 pKa = 5.04EE25 pKa = 4.3AKK27 pKa = 10.8GNVGSRR33 pKa = 11.84PATPPIAFSPRR44 pKa = 11.84VGAPHH49 pKa = 6.09VPSRR53 pKa = 11.84DD54 pKa = 3.04GFNQNTHH61 pKa = 6.65ALGQTQSGFSRR72 pKa = 11.84QNPGRR77 pKa = 11.84QPFKK81 pKa = 11.11SKK83 pKa = 10.28ISRR86 pKa = 11.84LQPIYY91 pKa = 9.08EE92 pKa = 4.29TQTLHH97 pKa = 7.48RR98 pKa = 11.84FVQRR102 pKa = 11.84EE103 pKa = 3.58ARR105 pKa = 11.84RR106 pKa = 11.84TIEE109 pKa = 4.65HH110 pKa = 5.95VGAPNEE116 pKa = 4.04PVPPGTFVSVSPTARR131 pKa = 11.84TGQNHH136 pKa = 4.98SRR138 pKa = 11.84EE139 pKa = 4.07NQRR142 pKa = 11.84NIITTTAGHH151 pKa = 6.73RR152 pKa = 11.84NLPTHH157 pKa = 5.58FVEE160 pKa = 5.11YY161 pKa = 10.83SRR163 pKa = 11.84ANPKK167 pKa = 9.75NLPDD171 pKa = 5.18LIPVEE176 pKa = 4.95RR177 pKa = 11.84YY178 pKa = 7.4EE179 pKa = 4.34FPKK182 pKa = 10.22SCRR185 pKa = 11.84GMDD188 pKa = 3.29SAGRR192 pKa = 11.84CQRR195 pKa = 11.84LFSGSFRR202 pKa = 11.84IFTGDD207 pKa = 3.22LYY209 pKa = 11.39EE210 pKa = 4.87DD211 pKa = 4.02GKK213 pKa = 11.08RR214 pKa = 11.84EE215 pKa = 4.02NIVII219 pKa = 4.11

Molecular weight: 24.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

186

0

186

67043

89

4633

360.4

40.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.311 ± 0.116

2.822 ± 0.147

4.8 ± 0.154

5.431 ± 0.221

4.627 ± 0.146

4.596 ± 0.129

2.543 ± 0.096

5.869 ± 0.089

5.743 ± 0.153

9.856 ± 0.138

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.506 ± 0.077

5.565 ± 0.138

4.785 ± 0.155

3.459 ± 0.126

4.992 ± 0.136

7.54 ± 0.147

6.663 ± 0.179

6.409 ± 0.119

1.247 ± 0.087

4.236 ± 0.108
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski