Marinomonas hwangdonensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oceanospirillaceae; Marinomonas

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3066 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3M8Q5I6|A0A3M8Q5I6_9GAMM zinc-ribbon_6 domain-containing protein OS=Marinomonas hwangdonensis OX=1053647 GN=EBI00_05705 PE=4 SV=1
MM1 pKa = 7.06AQSSIALIYY10 pKa = 9.31GTDD13 pKa = 3.38TNNTEE18 pKa = 4.28EE19 pKa = 4.31VGHH22 pKa = 6.78KK23 pKa = 9.29IAKK26 pKa = 8.28QWQEE30 pKa = 3.55LGEE33 pKa = 4.25TVDD36 pKa = 3.71IFNIKK41 pKa = 10.21DD42 pKa = 3.12IEE44 pKa = 4.14LQQLEE49 pKa = 4.9DD50 pKa = 3.9YY51 pKa = 11.64SMLILGIPTWDD62 pKa = 3.3FGGIQSDD69 pKa = 3.69WEE71 pKa = 4.74DD72 pKa = 2.98IGGSLAEE79 pKa = 4.65LSLNDD84 pKa = 3.95TVIALYY90 pKa = 10.93GLGDD94 pKa = 3.4QFGYY98 pKa = 11.1GDD100 pKa = 3.99YY101 pKa = 11.02FIDD104 pKa = 3.75AVGWLYY110 pKa = 11.27EE111 pKa = 4.08KK112 pKa = 10.65LQPTNATFIGQWPTEE127 pKa = 4.18GYY129 pKa = 10.69DD130 pKa = 3.74FEE132 pKa = 5.58ASRR135 pKa = 11.84ACIHH139 pKa = 6.89DD140 pKa = 3.77KK141 pKa = 10.83EE142 pKa = 4.82HH143 pKa = 6.57FVGLAIDD150 pKa = 4.13EE151 pKa = 4.54DD152 pKa = 4.12QQFEE156 pKa = 4.42LTDD159 pKa = 3.33QRR161 pKa = 11.84IEE163 pKa = 3.62QWVIQLYY170 pKa = 10.31AEE172 pKa = 4.28RR173 pKa = 11.84TLEE176 pKa = 4.12VAA178 pKa = 4.83

Molecular weight: 20.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3M8Q6P5|A0A3M8Q6P5_9GAMM QacE family quaternary ammonium compound efflux SMR transporter OS=Marinomonas hwangdonensis OX=1053647 GN=EBI00_07640 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 9.37RR14 pKa = 11.84NHH16 pKa = 5.37GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.12SGRR28 pKa = 11.84QIVARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.91VLSAA44 pKa = 4.11

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3066

0

3066

1026813

36

4153

334.9

37.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.96 ± 0.048

1.005 ± 0.015

5.604 ± 0.037

6.114 ± 0.047

4.129 ± 0.032

6.852 ± 0.048

2.286 ± 0.025

6.27 ± 0.038

5.05 ± 0.041

10.603 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.667 ± 0.021

4.011 ± 0.031

3.948 ± 0.029

4.422 ± 0.037

4.754 ± 0.036

6.745 ± 0.039

5.435 ± 0.047

7.107 ± 0.039

1.211 ± 0.018

2.826 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski