Flavobacterium sp. CC-CTC003

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium; unclassified Flavobacterium

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3402 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V3W7M5|A0A4V3W7M5_9FLAO Uncharacterized protein OS=Flavobacterium sp. CC-CTC003 OX=2565924 GN=E6C50_15940 PE=4 SV=1
MM1 pKa = 7.56DD2 pKa = 5.2TIKK5 pKa = 10.61KK6 pKa = 8.64VEE8 pKa = 4.07RR9 pKa = 11.84VEE11 pKa = 4.08VLIAKK16 pKa = 9.94LLEE19 pKa = 4.34KK20 pKa = 10.68YY21 pKa = 10.02AAEE24 pKa = 4.21GSNINRR30 pKa = 11.84IPSPFIQEE38 pKa = 3.99ALRR41 pKa = 11.84LKK43 pKa = 9.84DD44 pKa = 3.35TAPFLDD50 pKa = 3.63IDD52 pKa = 4.06SYY54 pKa = 11.97VYY56 pKa = 10.28FLSEE60 pKa = 4.04MSVLILDD67 pKa = 4.83LGDD70 pKa = 3.33GVYY73 pKa = 9.53ATFYY77 pKa = 11.44GLDD80 pKa = 3.5DD81 pKa = 3.83WEE83 pKa = 4.52EE84 pKa = 3.93GLNIFDD90 pKa = 4.01YY91 pKa = 10.33PIPEE95 pKa = 4.1EE96 pKa = 4.14NGFHH100 pKa = 6.88LVLDD104 pKa = 3.9ICNADD109 pKa = 3.36GAITYY114 pKa = 8.94FSYY117 pKa = 11.09NSEE120 pKa = 4.12NDD122 pKa = 3.25NEE124 pKa = 4.76DD125 pKa = 3.48ILWISTNVEE134 pKa = 3.91DD135 pKa = 5.45GPYY138 pKa = 9.42TKK140 pKa = 10.52SDD142 pKa = 3.33LSFVDD147 pKa = 3.94VLQSIYY153 pKa = 11.02DD154 pKa = 3.82NNWNVVV160 pKa = 3.0

Molecular weight: 18.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4S3ZZR4|A0A4S3ZZR4_9FLAO Uncharacterized protein OS=Flavobacterium sp. CC-CTC003 OX=2565924 GN=E6C50_04950 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSKK10 pKa = 9.13RR11 pKa = 11.84KK12 pKa = 9.48RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 9.53HH17 pKa = 4.24GFMEE21 pKa = 4.81RR22 pKa = 11.84MASANGRR29 pKa = 11.84KK30 pKa = 9.04VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.19GRR40 pKa = 11.84HH41 pKa = 5.41KK42 pKa = 10.14LTVSSEE48 pKa = 3.92PRR50 pKa = 11.84HH51 pKa = 5.77KK52 pKa = 10.61KK53 pKa = 9.84

Molecular weight: 6.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3402

0

3402

1146857

25

3918

337.1

37.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.754 ± 0.047

0.805 ± 0.018

5.367 ± 0.029

6.236 ± 0.048

5.153 ± 0.035

6.387 ± 0.038

1.769 ± 0.021

7.674 ± 0.04

7.473 ± 0.056

9.185 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.239 ± 0.022

6.069 ± 0.05

3.592 ± 0.029

3.672 ± 0.024

3.525 ± 0.028

6.197 ± 0.033

6.331 ± 0.067

6.292 ± 0.037

1.015 ± 0.014

4.266 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski