Achromobacter piechaudii ATCC 43553

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter; Achromobacter piechaudii

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5755 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D4XJT6|D4XJT6_9BURK VCBS repeat (3 repeats) (Fragment) OS=Achromobacter piechaudii ATCC 43553 OX=742159 GN=HMPREF0004_5733 PE=4 SV=1
MM1 pKa = 6.98FAAAEE6 pKa = 4.04PDD8 pKa = 3.17IDD10 pKa = 3.89EE11 pKa = 4.82AGCFFRR17 pKa = 11.84CPGCDD22 pKa = 3.48HH23 pKa = 6.98RR24 pKa = 11.84NKK26 pKa = 10.37LINVGPYY33 pKa = 10.32GDD35 pKa = 4.88EE36 pKa = 4.28DD37 pKa = 5.86PITLGQPDD45 pKa = 3.84DD46 pKa = 3.71

Molecular weight: 5.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D4X3F8|D4X3F8_9BURK ATPase family associated with various cellular activities (AAA) (Fragment) OS=Achromobacter piechaudii ATCC 43553 OX=742159 GN=HMPREF0004_0005 PE=3 SV=1
NN1 pKa = 7.35APSRR5 pKa = 11.84PASLQRR11 pKa = 11.84SSTMSRR17 pKa = 11.84TAAAARR23 pKa = 11.84GSPTTSPRR31 pKa = 11.84RR32 pKa = 11.84TRR34 pKa = 11.84RR35 pKa = 11.84KK36 pKa = 9.03MGPP39 pKa = 3.07

Molecular weight: 4.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5755

0

5755

1831974

39

9024

318.3

34.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.896 ± 0.046

0.88 ± 0.01

5.482 ± 0.031

4.814 ± 0.036

3.391 ± 0.026

8.47 ± 0.049

2.119 ± 0.016

4.487 ± 0.023

2.988 ± 0.026

10.639 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.568 ± 0.02

2.718 ± 0.028

5.317 ± 0.033

3.959 ± 0.02

6.884 ± 0.041

5.525 ± 0.039

5.318 ± 0.052

7.706 ± 0.031

1.418 ± 0.017

2.423 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski