Salmonella phage vB_SnwM_CGG4-1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Tevenvirinae; Gelderlandvirus; unclassified Gelderlandvirus

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 259 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B0VV34|A0A1B0VV34_9CAUD Exonuclease A OS=Salmonella phage vB_SnwM_CGG4-1 OX=1815631 GN=CGG41_012 PE=4 SV=1
MM1 pKa = 7.57ISYY4 pKa = 10.93SDD6 pKa = 4.22IEE8 pKa = 4.26NALIKK13 pKa = 10.67YY14 pKa = 8.3WGLNPLNPEE23 pKa = 4.47DD24 pKa = 4.64KK25 pKa = 10.1YY26 pKa = 11.22QSLRR30 pKa = 11.84EE31 pKa = 4.22LIGDD35 pKa = 4.02SEE37 pKa = 5.56DD38 pKa = 3.67IIADD42 pKa = 3.16IVEE45 pKa = 4.33ALNNYY50 pKa = 8.74

Molecular weight: 5.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B0VVP1|A0A1B0VVP1_9CAUD Uncharacterized protein OS=Salmonella phage vB_SnwM_CGG4-1 OX=1815631 GN=CGG41_242 PE=4 SV=1
MM1 pKa = 7.14TRR3 pKa = 11.84RR4 pKa = 11.84TFLSIEE10 pKa = 4.14TLAKK14 pKa = 10.57AGATVIGTIKK24 pKa = 10.32NADD27 pKa = 3.28WVGGVPMEE35 pKa = 4.73EE36 pKa = 4.17EE37 pKa = 3.85LSRR40 pKa = 11.84PGFYY44 pKa = 10.42FIMNNGGFAVSRR56 pKa = 11.84SYY58 pKa = 11.22VGRR61 pKa = 11.84QRR63 pKa = 11.84SKK65 pKa = 9.58TGFSNTLSQFRR76 pKa = 11.84QGRR79 pKa = 11.84SQLGRR84 pKa = 11.84TLSNNHH90 pKa = 6.88RR91 pKa = 11.84IYY93 pKa = 10.85SVVFVPVEE101 pKa = 3.82KK102 pKa = 10.23MKK104 pKa = 10.52PLTTGHH110 pKa = 6.68GKK112 pKa = 9.88GQLSLAFTRR121 pKa = 11.84KK122 pKa = 10.03HH123 pKa = 5.92EE124 pKa = 4.4DD125 pKa = 2.73AFQNLEE131 pKa = 3.84EE132 pKa = 4.33MNRR135 pKa = 11.84MLNDD139 pKa = 2.97NFKK142 pKa = 11.06FIMQKK147 pKa = 10.08YY148 pKa = 8.59

Molecular weight: 16.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

259

0

259

50204

38

1273

193.8

21.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.563 ± 0.203

1.03 ± 0.069

6.28 ± 0.109

7.26 ± 0.159

4.322 ± 0.096

6.328 ± 0.205

1.737 ± 0.089

7.412 ± 0.155

7.489 ± 0.219

7.462 ± 0.131

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.751 ± 0.096

5.766 ± 0.126

3.446 ± 0.114

3.408 ± 0.109

4.275 ± 0.106

6.499 ± 0.137

5.788 ± 0.21

6.503 ± 0.142

1.456 ± 0.053

4.223 ± 0.13
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski