Planktotalea frisia

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Planktotalea

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4128 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L9NW35|A0A1L9NW35_9RHOB Mycothiol acetyltransferase OS=Planktotalea frisia OX=696762 GN=mshD_3 PE=4 SV=1
MM1 pKa = 6.82MRR3 pKa = 11.84AGALCLALVPAPAMADD19 pKa = 3.46FTEE22 pKa = 4.57SNLLAIFYY30 pKa = 10.25HH31 pKa = 6.07EE32 pKa = 5.11LGHH35 pKa = 7.26AVIHH39 pKa = 5.87QMDD42 pKa = 3.9VPIFGQEE49 pKa = 3.34EE50 pKa = 3.95DD51 pKa = 3.86AADD54 pKa = 3.95ALSILLIDD62 pKa = 4.4ALYY65 pKa = 9.73EE66 pKa = 4.21AEE68 pKa = 4.13DD69 pKa = 4.43AEE71 pKa = 4.81VIAYY75 pKa = 9.74DD76 pKa = 3.94SANLFWAEE84 pKa = 4.04AQNEE88 pKa = 4.04PAFWDD93 pKa = 3.2THH95 pKa = 6.94GPDD98 pKa = 3.06EE99 pKa = 4.1QRR101 pKa = 11.84YY102 pKa = 8.56FNTVCLFYY110 pKa = 10.96GADD113 pKa = 3.39PDD115 pKa = 3.84GRR117 pKa = 11.84EE118 pKa = 3.97EE119 pKa = 3.93FAQDD123 pKa = 3.51LEE125 pKa = 4.49LPEE128 pKa = 4.33EE129 pKa = 4.09RR130 pKa = 11.84AEE132 pKa = 4.22GCEE135 pKa = 4.94DD136 pKa = 3.79EE137 pKa = 5.03FALAADD143 pKa = 3.97SWHH146 pKa = 6.34SVLDD150 pKa = 3.88GMSANSGLTGQLVLNGSVAMEE171 pKa = 5.08LISHH175 pKa = 7.06EE176 pKa = 4.18IKK178 pKa = 10.79ALNAEE183 pKa = 4.73FKK185 pKa = 9.46WPRR188 pKa = 11.84NITVTLEE195 pKa = 4.08SCDD198 pKa = 3.75EE199 pKa = 4.18ANAFYY204 pKa = 10.99DD205 pKa = 5.09LDD207 pKa = 3.95AQSITMCTEE216 pKa = 3.51LVDD219 pKa = 3.84WLDD222 pKa = 4.8GIATQIAADD231 pKa = 3.5

Molecular weight: 25.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L9P060|A0A1L9P060_9RHOB Amino_oxidase domain-containing protein OS=Planktotalea frisia OX=696762 GN=PFRI_08930 PE=4 SV=1
MM1 pKa = 6.92TRR3 pKa = 11.84FMAIQTTSRR12 pKa = 11.84RR13 pKa = 11.84VVAMAMTAFWAARR26 pKa = 11.84ATTLSLAKK34 pKa = 9.17TVRR37 pKa = 11.84IPFVAMVVATRR48 pKa = 11.84SLVAVVLTPFVVTGAAILSMVAMALTQSQAMAAQIPFAVAKK89 pKa = 10.03VRR91 pKa = 11.84IVLTVMQATII101 pKa = 3.57

Molecular weight: 10.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4128

0

4128

1233686

29

2126

298.9

32.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.387 ± 0.044

0.956 ± 0.013

6.033 ± 0.031

5.869 ± 0.038

3.971 ± 0.027

8.38 ± 0.041

2.114 ± 0.023

5.693 ± 0.027

3.938 ± 0.033

9.748 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.995 ± 0.02

3.045 ± 0.02

4.669 ± 0.023

3.312 ± 0.023

5.816 ± 0.035

5.709 ± 0.027

5.587 ± 0.026

7.08 ± 0.035

1.371 ± 0.017

2.327 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski