Syntrophotalea acetylenivorans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Syntrophotaleaceae; Syntrophotalea

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2762 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3GRU3|A0A1L3GRU3_9DELT Hydroxylamine reductase OS=Syntrophotalea acetylenivorans OX=1842532 GN=hcp PE=3 SV=1
MM1 pKa = 7.93IITGLLIPAVALAEE15 pKa = 4.22LKK17 pKa = 10.0TGVVTVSPMLGGVLMEE33 pKa = 5.1GDD35 pKa = 3.95QPVDD39 pKa = 3.66DD40 pKa = 5.73DD41 pKa = 4.26GVAYY45 pKa = 10.65SLGLGYY51 pKa = 10.68NLSKK55 pKa = 10.93EE56 pKa = 4.33FGLEE60 pKa = 3.85AVLGGANLDD69 pKa = 4.07SDD71 pKa = 4.83DD72 pKa = 5.52SSDD75 pKa = 3.79SDD77 pKa = 3.41VDD79 pKa = 3.96LFTYY83 pKa = 10.61RR84 pKa = 11.84LDD86 pKa = 3.27ALYY89 pKa = 11.01RR90 pKa = 11.84FMPDD94 pKa = 2.83NKK96 pKa = 10.16LVPYY100 pKa = 9.98LAAGVGGYY108 pKa = 10.49DD109 pKa = 4.92LDD111 pKa = 5.19NDD113 pKa = 4.54HH114 pKa = 6.7EE115 pKa = 4.44WMANYY120 pKa = 10.38GGGLLYY126 pKa = 10.33FFAEE130 pKa = 4.65NIALRR135 pKa = 11.84ADD137 pKa = 3.61VRR139 pKa = 11.84HH140 pKa = 6.19LMAFNEE146 pKa = 4.49SNLEE150 pKa = 4.03HH151 pKa = 6.86NLTYY155 pKa = 10.03TAGFLVQFAGVTAPAPKK172 pKa = 10.44APLDD176 pKa = 3.7SDD178 pKa = 3.91GDD180 pKa = 4.3GVTDD184 pKa = 6.62DD185 pKa = 6.29LDD187 pKa = 3.59QCPNTPQGAPVDD199 pKa = 4.11TKK201 pKa = 11.29GCPLDD206 pKa = 3.72SDD208 pKa = 4.0GDD210 pKa = 4.31GVFDD214 pKa = 5.93YY215 pKa = 11.29LDD217 pKa = 3.54QCPDD221 pKa = 3.44TPADD225 pKa = 3.59APVDD229 pKa = 3.86NKK231 pKa = 10.9GCPLDD236 pKa = 3.8SDD238 pKa = 4.0GDD240 pKa = 4.31GVFDD244 pKa = 5.93YY245 pKa = 11.29LDD247 pKa = 3.54QCPDD251 pKa = 3.43TPAGAPVDD259 pKa = 4.21SKK261 pKa = 11.7GCSLDD266 pKa = 3.35SDD268 pKa = 3.96GDD270 pKa = 3.9GVYY273 pKa = 10.23DD274 pKa = 5.54YY275 pKa = 11.55LDD277 pKa = 3.52QCPGTPAGIPVDD289 pKa = 3.62ATGCEE294 pKa = 4.02LKK296 pKa = 10.02LTLRR300 pKa = 11.84INFDD304 pKa = 3.67FNSAVIKK311 pKa = 10.56PEE313 pKa = 3.74FNAEE317 pKa = 3.43VDD319 pKa = 3.39KK320 pKa = 11.31AAEE323 pKa = 3.91FVRR326 pKa = 11.84ANKK329 pKa = 9.58NVPFILLTGHH339 pKa = 6.42TDD341 pKa = 3.21SMGKK345 pKa = 8.82EE346 pKa = 4.22AYY348 pKa = 9.46NQQLSDD354 pKa = 3.31QRR356 pKa = 11.84AAAVRR361 pKa = 11.84QALIDD366 pKa = 3.45QYY368 pKa = 11.87GFDD371 pKa = 4.01GDD373 pKa = 3.93KK374 pKa = 10.83LVARR378 pKa = 11.84GYY380 pKa = 11.52GEE382 pKa = 4.13TQPIADD388 pKa = 3.79NSTEE392 pKa = 3.7EE393 pKa = 3.75GRR395 pKa = 11.84YY396 pKa = 6.55QNRR399 pKa = 11.84RR400 pKa = 11.84VEE402 pKa = 4.24LVCCAVLPEE411 pKa = 4.05

Molecular weight: 43.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3GR09|A0A1L3GR09_9DELT Transketolase OS=Syntrophotalea acetylenivorans OX=1842532 GN=A7E78_11150 PE=4 SV=1
MM1 pKa = 7.3FFSLKK6 pKa = 9.98IALSSLRR13 pKa = 11.84AHH15 pKa = 7.57RR16 pKa = 11.84LRR18 pKa = 11.84SILAMVGVFLGALALTGVQHH38 pKa = 6.5VSRR41 pKa = 11.84SMLLKK46 pKa = 10.6AEE48 pKa = 4.47HH49 pKa = 6.07EE50 pKa = 4.33TAKK53 pKa = 10.91LGTNLFMVRR62 pKa = 11.84SGQLSFRR69 pKa = 11.84PSGSSRR75 pKa = 11.84VRR77 pKa = 11.84GLARR81 pKa = 11.84NFTRR85 pKa = 11.84QDD87 pKa = 3.02AKK89 pKa = 11.36ALLAGVPAARR99 pKa = 11.84AGAPFVLATSPIRR112 pKa = 11.84SGDD115 pKa = 3.65LQINCQLVATLPSYY129 pKa = 10.02ATVRR133 pKa = 11.84NVKK136 pKa = 9.83AAWGRR141 pKa = 11.84FLSASDD147 pKa = 3.19EE148 pKa = 4.18AEE150 pKa = 3.93RR151 pKa = 11.84AKK153 pKa = 11.0VCVLGASIARR163 pKa = 11.84RR164 pKa = 11.84LFGDD168 pKa = 3.39GQGAVGQQVMLHH180 pKa = 5.86RR181 pKa = 11.84AGLRR185 pKa = 11.84VIGVMEE191 pKa = 4.53PKK193 pKa = 10.54GADD196 pKa = 2.97IAGTDD201 pKa = 3.01QDD203 pKa = 3.78EE204 pKa = 4.55QVFVPLTTYY213 pKa = 8.62MRR215 pKa = 11.84RR216 pKa = 11.84LANQDD221 pKa = 3.6WISGVYY227 pKa = 9.66LQLADD232 pKa = 3.53SQAIEE237 pKa = 4.27EE238 pKa = 4.36ARR240 pKa = 11.84QAAATILRR248 pKa = 11.84RR249 pKa = 11.84RR250 pKa = 11.84HH251 pKa = 6.01SIDD254 pKa = 3.12VGEE257 pKa = 5.32DD258 pKa = 3.24DD259 pKa = 6.65DD260 pKa = 4.47FTLLAAQDD268 pKa = 3.61TMRR271 pKa = 11.84VQRR274 pKa = 11.84DD275 pKa = 3.31ALALVQTLGLLSSSISFAVGGLGILSIMVLLVRR308 pKa = 11.84TRR310 pKa = 11.84RR311 pKa = 11.84LEE313 pKa = 3.78IGVRR317 pKa = 11.84RR318 pKa = 11.84AVGAKK323 pKa = 9.67RR324 pKa = 11.84RR325 pKa = 11.84DD326 pKa = 3.27IVRR329 pKa = 11.84QFMFEE334 pKa = 3.94AGLMAGIGGGLGVLSSLLLVLVVCRR359 pKa = 11.84IGEE362 pKa = 4.06MPLAYY367 pKa = 10.26DD368 pKa = 3.6PVLIGSSLFGSLLLGLAAGAYY389 pKa = 7.53PAWQAANVEE398 pKa = 4.14ILQVLRR404 pKa = 11.84NEE406 pKa = 4.23

Molecular weight: 43.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2762

0

2762

882519

33

1929

319.5

35.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.283 ± 0.053

1.322 ± 0.021

5.411 ± 0.035

6.661 ± 0.047

3.972 ± 0.031

7.79 ± 0.038

2.081 ± 0.02

5.619 ± 0.041

4.459 ± 0.039

11.513 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.309 ± 0.022

3.127 ± 0.026

4.515 ± 0.029

4.253 ± 0.031

6.328 ± 0.043

5.692 ± 0.033

4.823 ± 0.029

7.145 ± 0.039

1.056 ± 0.017

2.641 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski