Campoletis sonorensis ichnovirus (strain Texas A&M) (CsIV)

Taxonomy: Viruses; Polydnaviridae; Ichnovirus; Campoletis sonorensis ichnovirus

Average proteome isoelectric point is 5.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q77ZH4|Q77ZH4_CSIVT Cysteine-rich protein OS=Campoletis sonorensis ichnovirus (strain Texas A&M) OX=654920 GN=WHv1.0 PE=4 SV=1
MM1 pKa = 7.19KK2 pKa = 10.53VLWFLLGAAVMVQARR17 pKa = 11.84PDD19 pKa = 3.52MVSGEE24 pKa = 4.33KK25 pKa = 10.51SGDD28 pKa = 3.21WASEE32 pKa = 4.16TEE34 pKa = 4.77FIVTEE39 pKa = 4.61DD40 pKa = 4.07GIKK43 pKa = 10.53PNPNYY48 pKa = 10.23VKK50 pKa = 10.31QDD52 pKa = 3.63GVSSPPVSGWTEE64 pKa = 3.67DD65 pKa = 3.4RR66 pKa = 11.84EE67 pKa = 4.32FAVTSSTAGPEE78 pKa = 4.21PKK80 pKa = 10.27SSVINIDD87 pKa = 3.07VTKK90 pKa = 10.35PITAEE95 pKa = 3.64LTINFHH101 pKa = 5.55QVQDD105 pKa = 4.13PAPKK109 pKa = 9.93PEE111 pKa = 4.62PSCIDD116 pKa = 2.66NWKK119 pKa = 8.82YY120 pKa = 10.7CRR122 pKa = 11.84GINKK126 pKa = 8.17PCCGQQLMEE135 pKa = 6.03DD136 pKa = 3.8GTLGPKK142 pKa = 10.18HH143 pKa = 5.78FVCFEE148 pKa = 4.62LGQGICTPLSQIKK161 pKa = 10.24NADD164 pKa = 3.8LFAKK168 pKa = 10.56LADD171 pKa = 3.7QLNDD175 pKa = 3.14TNYY178 pKa = 11.22AEE180 pKa = 6.1LEE182 pKa = 4.09SQYY185 pKa = 9.59WKK187 pKa = 10.55SVSSPEE193 pKa = 4.18SSSTFF198 pKa = 3.22

Molecular weight: 21.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8JV09|Q8JV09_CSIVT Innexin-like protein 2 OS=Campoletis sonorensis ichnovirus (strain Texas A&M) OX=654920 PE=3 SV=1
MM1 pKa = 7.35LKK3 pKa = 9.87IFRR6 pKa = 11.84TLRR9 pKa = 11.84GLLKK13 pKa = 10.47VHH15 pKa = 6.97VISIDD20 pKa = 3.33NNFFILHH27 pKa = 5.04YY28 pKa = 9.75KK29 pKa = 7.43ITVVILLALAMLVTSQQFFKK49 pKa = 11.49NPMEE53 pKa = 5.0CNFSDD58 pKa = 4.13LPLGSSHH65 pKa = 6.23YY66 pKa = 9.8CYY68 pKa = 10.98VHH70 pKa = 6.29ATFLEE75 pKa = 4.34QQQITHH81 pKa = 6.66HH82 pKa = 6.26VPPQRR87 pKa = 11.84LPGGNISGEE96 pKa = 4.16TGEE99 pKa = 4.81KK100 pKa = 10.14EE101 pKa = 3.77FRR103 pKa = 11.84FYY105 pKa = 11.36NYY107 pKa = 10.47YY108 pKa = 9.19EE109 pKa = 4.06WVYY112 pKa = 9.98LTLAVQAILFYY123 pKa = 10.52VPHH126 pKa = 6.68YY127 pKa = 9.73IWKK130 pKa = 8.48AWEE133 pKa = 4.35GGKK136 pKa = 9.11MKK138 pKa = 10.05MLAVEE143 pKa = 4.73FASPVLSEE151 pKa = 5.19DD152 pKa = 3.77FIEE155 pKa = 4.4NKK157 pKa = 9.32MIPVVEE163 pKa = 4.23YY164 pKa = 10.56FCTTLHH170 pKa = 5.79SHH172 pKa = 6.08NAYY175 pKa = 9.39AYY177 pKa = 9.65KK178 pKa = 10.79YY179 pKa = 6.86FTCEE183 pKa = 3.49FLNLVNVVGQILFLKK198 pKa = 10.19IFLGEE203 pKa = 3.92EE204 pKa = 4.01FASFGIDD211 pKa = 3.71VITFDD216 pKa = 3.92HH217 pKa = 6.23RR218 pKa = 11.84QEE220 pKa = 4.14KK221 pKa = 10.29SMKK224 pKa = 10.31NPIDD228 pKa = 3.39RR229 pKa = 11.84LFPIVTRR236 pKa = 11.84CSYY239 pKa = 10.81HH240 pKa = 6.96KK241 pKa = 10.02YY242 pKa = 9.42GPSGKK247 pKa = 9.51VEE249 pKa = 3.84NWEE252 pKa = 4.19GLCLLPEE259 pKa = 4.12NSLNGKK265 pKa = 9.48IYY267 pKa = 10.37IFMWFWFHH275 pKa = 6.48MLTAISSVVVIYY287 pKa = 10.34RR288 pKa = 11.84IVTLCSPSVRR298 pKa = 11.84LYY300 pKa = 10.62RR301 pKa = 11.84FKK303 pKa = 10.68PLSGLIRR310 pKa = 11.84SEE312 pKa = 4.83DD313 pKa = 3.33IAIVFPKK320 pKa = 10.35LNVGIGFCCVGCNGISTRR338 pKa = 11.84LHH340 pKa = 5.44TKK342 pKa = 10.18RR343 pKa = 11.84SFLALQSTLARR354 pKa = 11.84PLQMLKK360 pKa = 10.74VIADD364 pKa = 3.52VKK366 pKa = 10.8LALL369 pKa = 4.36

Molecular weight: 42.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1457

198

369

291.4

33.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.873 ± 0.271

3.02 ± 0.479

4.53 ± 0.761

7.001 ± 1.119

5.971 ± 0.761

5.559 ± 0.423

2.471 ± 0.51

6.452 ± 0.561

6.04 ± 0.595

9.54 ± 1.003

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.402 ± 0.381

4.736 ± 0.283

5.903 ± 0.717

3.089 ± 0.356

3.569 ± 0.546

7.344 ± 0.59

5.353 ± 0.213

6.726 ± 0.413

1.647 ± 0.163

3.775 ± 0.618
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski