Corynebacterium sp. sy039

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; unclassified Corynebacterium

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1918 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5B8NS09|A0A5B8NS09_9CORY Pyridoxal phosphate-dependent aminotransferase OS=Corynebacterium sp. sy039 OX=2599641 GN=FQV43_00685 PE=4 SV=1
MM1 pKa = 7.86PAFQAEE7 pKa = 4.16VGMPYY12 pKa = 10.25WLDD15 pKa = 3.52LTSSDD20 pKa = 3.89SAQSVQFYY28 pKa = 10.98SEE30 pKa = 4.14LFGWEE35 pKa = 3.45ISEE38 pKa = 4.17YY39 pKa = 10.55SPGYY43 pKa = 9.81HH44 pKa = 5.78VARR47 pKa = 11.84IQGLPVAGIVQRR59 pKa = 11.84DD60 pKa = 3.86KK61 pKa = 11.77NSAQPDD67 pKa = 3.17TWITYY72 pKa = 8.39FLSGDD77 pKa = 3.87IDD79 pKa = 4.05TQCQQIAQLGGRR91 pKa = 11.84VLAPAAEE98 pKa = 4.17VRR100 pKa = 11.84LGRR103 pKa = 11.84MAIVVDD109 pKa = 3.53NAGAAFGLIEE119 pKa = 4.82PGGEE123 pKa = 4.03DD124 pKa = 3.17SFIAAGEE131 pKa = 4.02PGTPVWHH138 pKa = 6.77EE139 pKa = 3.72LSCVNDD145 pKa = 3.55YY146 pKa = 11.3AQATQFYY153 pKa = 10.03ADD155 pKa = 3.58LFEE158 pKa = 4.53WLMSEE163 pKa = 4.23QRR165 pKa = 11.84NEE167 pKa = 3.89YY168 pKa = 10.62GSYY171 pKa = 7.51TTALVDD177 pKa = 3.85GAAFAGILDD186 pKa = 3.86AHH188 pKa = 6.13QLFAAHH194 pKa = 6.62VPNFWQSYY202 pKa = 9.51LGVADD207 pKa = 3.16VDD209 pKa = 3.91AAVVRR214 pKa = 11.84VPEE217 pKa = 4.42LGGDD221 pKa = 4.3IIRR224 pKa = 11.84EE225 pKa = 4.08PWDD228 pKa = 3.32SAFGRR233 pKa = 11.84MAIIADD239 pKa = 3.6ATGATLTICEE249 pKa = 4.13VAEE252 pKa = 4.04PVAEE256 pKa = 4.17GRR258 pKa = 11.84EE259 pKa = 4.15SDD261 pKa = 3.8PLQDD265 pKa = 3.78IDD267 pKa = 4.29LSNYY271 pKa = 10.0PEE273 pKa = 4.39FGG275 pKa = 3.28

Molecular weight: 29.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5B8NWH0|A0A5B8NWH0_9CORY Asparaginase OS=Corynebacterium sp. sy039 OX=2599641 GN=FQV43_06825 PE=3 SV=1
MM1 pKa = 7.46TKK3 pKa = 10.27GKK5 pKa = 8.73RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84KK18 pKa = 8.59HH19 pKa = 4.59GFRR22 pKa = 11.84TRR24 pKa = 11.84MATRR28 pKa = 11.84AGRR31 pKa = 11.84AIVAARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.3GRR42 pKa = 11.84ARR44 pKa = 11.84VTAA47 pKa = 4.09

Molecular weight: 5.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1918

0

1918

653807

33

3042

340.9

37.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.899 ± 0.058

0.9 ± 0.017

5.513 ± 0.049

6.029 ± 0.06

3.468 ± 0.04

7.558 ± 0.045

2.506 ± 0.029

6.241 ± 0.048

3.882 ± 0.045

9.629 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.167 ± 0.026

3.144 ± 0.03

4.653 ± 0.039

4.171 ± 0.042

5.393 ± 0.055

6.501 ± 0.043

5.972 ± 0.043

7.614 ± 0.051

1.264 ± 0.022

2.496 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski