Flavobacterium tiangeerense

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

Average proteome isoelectric point is 6.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1482 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A562L6D4|A0A562L6D4_9FLAO Site-specific DNA-methyltransferase (adenine-specific) OS=Flavobacterium tiangeerense OX=459471 GN=IQ05_00123 PE=3 SV=1
MM1 pKa = 6.29NTNYY5 pKa = 10.62KK6 pKa = 10.38LEE8 pKa = 4.16SEE10 pKa = 4.48FLGKK14 pKa = 10.28VEE16 pKa = 5.19DD17 pKa = 6.18DD18 pKa = 4.2KK19 pKa = 12.12DD20 pKa = 3.5EE21 pKa = 4.49TNNKK25 pKa = 9.07EE26 pKa = 4.14LLSEE30 pKa = 4.09EE31 pKa = 4.06QLNKK35 pKa = 10.05IIEE38 pKa = 4.47KK39 pKa = 10.03YY40 pKa = 10.35PNVPLDD46 pKa = 3.61YY47 pKa = 10.18IGYY50 pKa = 9.14LRR52 pKa = 11.84EE53 pKa = 4.05IGSGNFRR60 pKa = 11.84EE61 pKa = 4.64CQFKK65 pKa = 10.56VQSFLFNLEE74 pKa = 4.01DD75 pKa = 3.93LGLDD79 pKa = 3.02EE80 pKa = 6.31HH81 pKa = 8.66YY82 pKa = 10.56DD83 pKa = 3.12IKK85 pKa = 11.36SNIWFFGDD93 pKa = 3.89NYY95 pKa = 10.94CGDD98 pKa = 3.73FSGFDD103 pKa = 3.51LDD105 pKa = 5.64LYY107 pKa = 11.1DD108 pKa = 4.05GLVVEE113 pKa = 6.27FWHH116 pKa = 5.87EE117 pKa = 4.12TGEE120 pKa = 4.68LFYY123 pKa = 11.04TNQTFQNYY131 pKa = 7.57IRR133 pKa = 11.84QQIGIDD139 pKa = 3.48EE140 pKa = 4.68NGNDD144 pKa = 3.58TLEE147 pKa = 4.05

Molecular weight: 17.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A562L666|A0A562L666_9FLAO Uncharacterized protein OS=Flavobacterium tiangeerense OX=459471 GN=IQ05_00078 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSKK10 pKa = 9.13RR11 pKa = 11.84KK12 pKa = 9.48RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 9.91HH17 pKa = 4.39GFMDD21 pKa = 4.5RR22 pKa = 11.84MASANGRR29 pKa = 11.84KK30 pKa = 9.04VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.19GRR40 pKa = 11.84HH41 pKa = 5.41KK42 pKa = 10.14LTVSSEE48 pKa = 3.92PRR50 pKa = 11.84HH51 pKa = 5.77KK52 pKa = 10.61KK53 pKa = 9.84

Molecular weight: 6.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1482

0

1482

497200

39

2691

335.5

37.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.542 ± 0.072

0.747 ± 0.02

5.208 ± 0.04

6.368 ± 0.068

5.397 ± 0.048

6.094 ± 0.068

1.622 ± 0.03

8.273 ± 0.066

8.145 ± 0.075

9.345 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.184 ± 0.031

6.406 ± 0.07

3.28 ± 0.04

3.629 ± 0.036

3.093 ± 0.044

6.521 ± 0.051

5.955 ± 0.059

6.244 ± 0.049

0.974 ± 0.02

3.971 ± 0.04
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski