Mangrovimonas yunxiaonensis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Mangrovimonas

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2307 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A084TJU7|A0A084TJU7_9FLAO Uncharacterized protein OS=Mangrovimonas yunxiaonensis OX=1197477 GN=IA57_11140 PE=4 SV=1
MM1 pKa = 7.49KK2 pKa = 10.3NSNYY6 pKa = 9.9SRR8 pKa = 11.84LVSIFITLLTLVTSCSSDD26 pKa = 4.08DD27 pKa = 4.74DD28 pKa = 4.06NTSNDD33 pKa = 3.89PNNSSTFLDD42 pKa = 3.51KK43 pKa = 10.0WWYY46 pKa = 10.56DD47 pKa = 3.31SDD49 pKa = 5.55DD50 pKa = 3.86FAADD54 pKa = 3.39IYY56 pKa = 10.68FHH58 pKa = 7.37SNGEE62 pKa = 4.09YY63 pKa = 8.51EE64 pKa = 4.23QKK66 pKa = 10.7KK67 pKa = 8.73VVQGTSYY74 pKa = 10.3IANGDD79 pKa = 3.15WVYY82 pKa = 11.07EE83 pKa = 4.13NEE85 pKa = 4.03SSGIIRR91 pKa = 11.84IDD93 pKa = 3.38NLVGNGQTQSTIWLKK108 pKa = 10.85VSNIQVNTITIQQSSDD124 pKa = 2.92GTDD127 pKa = 3.14YY128 pKa = 11.53SEE130 pKa = 5.44AMDD133 pKa = 4.75YY134 pKa = 11.17QDD136 pKa = 3.81TDD138 pKa = 3.08NN139 pKa = 4.62

Molecular weight: 15.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A084TID8|A0A084TID8_9FLAO 50S ribosomal protein L29 OS=Mangrovimonas yunxiaonensis OX=1197477 GN=rpmC PE=3 SV=1
MM1 pKa = 7.32SVKK4 pKa = 9.96KK5 pKa = 10.34LKK7 pKa = 10.43PITPGQRR14 pKa = 11.84FRR16 pKa = 11.84VVNGYY21 pKa = 9.53DD22 pKa = 4.32AITTDD27 pKa = 3.72KK28 pKa = 11.01PEE30 pKa = 4.39KK31 pKa = 10.55SLLAPKK37 pKa = 9.91KK38 pKa = 10.22RR39 pKa = 11.84SGGRR43 pKa = 11.84NSQGKK48 pKa = 6.48MTMRR52 pKa = 11.84YY53 pKa = 9.3IGGGHH58 pKa = 6.61KK59 pKa = 9.72KK60 pKa = 9.77RR61 pKa = 11.84YY62 pKa = 9.44RR63 pKa = 11.84IIDD66 pKa = 3.78FKK68 pKa = 11.1RR69 pKa = 11.84NKK71 pKa = 9.94AGVSAEE77 pKa = 4.05VMSIEE82 pKa = 3.98YY83 pKa = 10.47DD84 pKa = 3.48PNRR87 pKa = 11.84TAFIALLKK95 pKa = 10.95YY96 pKa = 10.31EE97 pKa = 4.98DD98 pKa = 3.76GEE100 pKa = 4.02KK101 pKa = 10.3RR102 pKa = 11.84YY103 pKa = 10.22IIAQNGLQVGQNVISGQEE121 pKa = 3.89NVPTEE126 pKa = 4.12IGNTMPLSKK135 pKa = 10.29IPLGTIISCVEE146 pKa = 3.63LRR148 pKa = 11.84PGQGAVMARR157 pKa = 11.84SAGAFAQLMARR168 pKa = 11.84DD169 pKa = 4.26GKK171 pKa = 10.62FATIKK176 pKa = 10.5LPSGEE181 pKa = 4.11TRR183 pKa = 11.84LVLVSCMATIGVVSNSDD200 pKa = 3.21HH201 pKa = 6.09QLLVSGKK208 pKa = 9.49AGRR211 pKa = 11.84SRR213 pKa = 11.84WLGRR217 pKa = 11.84RR218 pKa = 11.84PRR220 pKa = 11.84TRR222 pKa = 11.84PVVMNPVDD230 pKa = 3.47HH231 pKa = 7.05PMGGGEE237 pKa = 3.89GRR239 pKa = 11.84ASGGHH244 pKa = 5.06PRR246 pKa = 11.84SRR248 pKa = 11.84KK249 pKa = 8.85GLPAKK254 pKa = 10.34GYY256 pKa = 7.1RR257 pKa = 11.84TRR259 pKa = 11.84SKK261 pKa = 9.56TKK263 pKa = 10.12ASNKK267 pKa = 9.84YY268 pKa = 8.91IVEE271 pKa = 4.08RR272 pKa = 11.84RR273 pKa = 11.84KK274 pKa = 10.24KK275 pKa = 10.1

Molecular weight: 30.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2307

0

2307

774474

47

2785

335.7

37.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.16 ± 0.052

0.801 ± 0.025

5.531 ± 0.056

6.269 ± 0.055

5.071 ± 0.043

6.323 ± 0.054

2.041 ± 0.028

7.391 ± 0.048

7.577 ± 0.076

9.449 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.213 ± 0.028

6.055 ± 0.053

3.473 ± 0.03

3.652 ± 0.031

3.313 ± 0.039

5.922 ± 0.047

6.2 ± 0.065

6.566 ± 0.04

0.969 ± 0.018

4.026 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski