Celeribacter indicus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Celeribacter

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4665 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B5DV67|A0A0B5DV67_9RHOB Uncharacterized protein OS=Celeribacter indicus OX=1208324 GN=P73_2588 PE=4 SV=1
MM1 pKa = 7.34KK2 pKa = 10.19RR3 pKa = 11.84YY4 pKa = 10.13LIVSALALGTAAPAFAGGYY23 pKa = 7.9SEE25 pKa = 5.36PVIEE29 pKa = 4.49PAPAPVAVVDD39 pKa = 5.17PGVDD43 pKa = 2.82WTGFYY48 pKa = 10.82AGLQYY53 pKa = 11.26GQGTASLDD61 pKa = 3.58FDD63 pKa = 6.15DD64 pKa = 6.8DD65 pKa = 3.99ILVDD69 pKa = 5.74ADD71 pKa = 5.21DD72 pKa = 5.14EE73 pKa = 5.23DD74 pKa = 6.35DD75 pKa = 3.87FDD77 pKa = 6.76AYY79 pKa = 10.53GLHH82 pKa = 7.05AGYY85 pKa = 8.46MWDD88 pKa = 3.66FGQWVAGAEE97 pKa = 3.93LDD99 pKa = 3.92YY100 pKa = 11.71NKK102 pKa = 10.91ADD104 pKa = 3.64FDD106 pKa = 4.25EE107 pKa = 6.43ADD109 pKa = 3.48EE110 pKa = 4.79ADD112 pKa = 3.81LVRR115 pKa = 11.84LRR117 pKa = 11.84GRR119 pKa = 11.84AGYY122 pKa = 10.25DD123 pKa = 2.91LGRR126 pKa = 11.84FLPYY130 pKa = 9.21VTLGVANISSDD141 pKa = 3.55FTDD144 pKa = 5.33VIDD147 pKa = 5.4DD148 pKa = 4.43DD149 pKa = 5.73ADD151 pKa = 3.78FSEE154 pKa = 4.38TGVTYY159 pKa = 10.44GIGVDD164 pKa = 3.66YY165 pKa = 10.75LVSDD169 pKa = 4.4RR170 pKa = 11.84FSVGLEE176 pKa = 3.69YY177 pKa = 10.83SKK179 pKa = 11.33QDD181 pKa = 3.13FDD183 pKa = 3.97EE184 pKa = 4.68VEE186 pKa = 4.39EE187 pKa = 4.48IGGEE191 pKa = 4.38SIDD194 pKa = 4.72LDD196 pKa = 3.66AEE198 pKa = 4.46MVQIRR203 pKa = 11.84AAYY206 pKa = 9.77RR207 pKa = 11.84FF208 pKa = 3.6

Molecular weight: 22.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B5DQ07|A0A0B5DQ07_9RHOB Precorrin-4 C11-methyltransferase OS=Celeribacter indicus OX=1208324 GN=P73_0484 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.31QPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.44AGRR28 pKa = 11.84KK29 pKa = 8.46VLNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.07SLSAA44 pKa = 3.93

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4665

0

4665

1422014

36

2742

304.8

33.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.587 ± 0.054

0.85 ± 0.012

5.833 ± 0.032

6.313 ± 0.035

3.721 ± 0.024

8.805 ± 0.038

2.032 ± 0.016

5.009 ± 0.024

2.707 ± 0.03

10.343 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.648 ± 0.016

2.254 ± 0.016

5.262 ± 0.028

2.818 ± 0.019

7.456 ± 0.038

5.084 ± 0.025

5.412 ± 0.024

7.336 ± 0.028

1.354 ± 0.016

2.174 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski