Pigeonpox virus

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Avipoxvirus

Average proteome isoelectric point is 6.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 222 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A068EER1|A0A068EER1_9POXV Major core protein 4a precursor OS=Pigeonpox virus OX=10264 GN=fep_178 PE=3 SV=1
MM1 pKa = 7.76IIYY4 pKa = 10.24IITLSLLFIKK14 pKa = 10.68VITSSKK20 pKa = 10.48EE21 pKa = 3.87PVKK24 pKa = 10.83NPQDD28 pKa = 3.13ILHH31 pKa = 6.73IIEE34 pKa = 4.42HH35 pKa = 6.23NKK37 pKa = 9.44TGVTACSLYY46 pKa = 11.02CFDD49 pKa = 4.71SSKK52 pKa = 11.34GLDD55 pKa = 3.42QPKK58 pKa = 8.87TFILPGKK65 pKa = 9.66YY66 pKa = 9.99SNNSIKK72 pKa = 10.87LEE74 pKa = 4.03VAIDD78 pKa = 3.67IYY80 pKa = 11.5KK81 pKa = 10.48KK82 pKa = 10.6GSKK85 pKa = 9.63SDD87 pKa = 3.72YY88 pKa = 10.55SHH90 pKa = 7.7PCQAFQFCVSGNFSGKK106 pKa = 10.17RR107 pKa = 11.84FDD109 pKa = 3.75HH110 pKa = 6.1YY111 pKa = 11.25LYY113 pKa = 10.52GYY115 pKa = 7.99TITGFIDD122 pKa = 3.19IASSYY127 pKa = 9.19YY128 pKa = 10.61SGMSISTITLMPLQEE143 pKa = 4.48GSLNHH148 pKa = 7.2DD149 pKa = 3.9SEE151 pKa = 5.0EE152 pKa = 4.57DD153 pKa = 3.65CTTPPISTITQYY165 pKa = 11.05QRR167 pKa = 11.84IPEE170 pKa = 4.48PIIKK174 pKa = 9.55EE175 pKa = 3.91GCKK178 pKa = 9.75PVILQRR184 pKa = 11.84YY185 pKa = 8.53GEE187 pKa = 4.48SDD189 pKa = 4.02DD190 pKa = 4.39PTCIMYY196 pKa = 9.51WDD198 pKa = 4.04NTWDD202 pKa = 3.61NYY204 pKa = 10.87CDD206 pKa = 3.22VGFFNSQQRR215 pKa = 11.84DD216 pKa = 3.51HH217 pKa = 7.59DD218 pKa = 4.5PLVLPLNNYY227 pKa = 10.06LGISDD232 pKa = 4.97AFQDD236 pKa = 3.93FQSYY240 pKa = 8.5YY241 pKa = 10.68CKK243 pKa = 10.68SLDD246 pKa = 3.71LNQSYY251 pKa = 9.43SVCISIGEE259 pKa = 4.37TPTTVTYY266 pKa = 10.51HH267 pKa = 6.15SYY269 pKa = 11.69EE270 pKa = 4.32NITVNEE276 pKa = 4.14LLTRR280 pKa = 11.84IMILYY285 pKa = 10.37GEE287 pKa = 4.56EE288 pKa = 4.29KK289 pKa = 9.97VHH291 pKa = 6.77KK292 pKa = 10.53LPFRR296 pKa = 11.84NITIMAHH303 pKa = 5.56AQIQSLPLINSTCDD317 pKa = 3.31PNKK320 pKa = 10.27FDD322 pKa = 6.77DD323 pKa = 6.23DD324 pKa = 6.01DD325 pKa = 7.53DD326 pKa = 7.6DD327 pKa = 7.65DD328 pKa = 7.59DD329 pKa = 7.65DD330 pKa = 7.65DD331 pKa = 7.65DD332 pKa = 7.65DD333 pKa = 7.65DD334 pKa = 7.65DD335 pKa = 7.65DD336 pKa = 7.65DD337 pKa = 7.62DD338 pKa = 7.59DD339 pKa = 7.71DD340 pKa = 7.58DD341 pKa = 6.68DD342 pKa = 6.84DD343 pKa = 4.87EE344 pKa = 5.58YY345 pKa = 12.15NLYY348 pKa = 9.63TEE350 pKa = 4.42STPSKK355 pKa = 10.01VTTKK359 pKa = 10.03PKK361 pKa = 9.53KK362 pKa = 9.14TITDD366 pKa = 3.6EE367 pKa = 3.89YY368 pKa = 11.46DD369 pKa = 3.4SIFNSFDD376 pKa = 3.27NFDD379 pKa = 3.66LEE381 pKa = 4.61KK382 pKa = 10.78RR383 pKa = 3.75

Molecular weight: 43.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A068EE70|A0A068EE70_9POXV DNA polymerase OS=Pigeonpox virus OX=10264 GN=fep_096 PE=3 SV=1
MM1 pKa = 7.54EE2 pKa = 5.37IARR5 pKa = 11.84EE6 pKa = 3.92TLITIGLTILVVVLVITGFSLVLRR30 pKa = 11.84LIPGVYY36 pKa = 9.71SAASRR41 pKa = 11.84SSFTAGKK48 pKa = 9.17VLRR51 pKa = 11.84FMEE54 pKa = 4.3IFSTVMFIPGIIILYY69 pKa = 9.17AAYY72 pKa = 9.46IRR74 pKa = 11.84KK75 pKa = 7.84TKK77 pKa = 9.57MKK79 pKa = 10.73NNN81 pKa = 3.69

Molecular weight: 8.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

222

0

222

73067

34

1937

329.1

38.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.32 ± 0.105

2.203 ± 0.08

6.438 ± 0.119

5.674 ± 0.099

4.293 ± 0.123

3.861 ± 0.116

2.005 ± 0.058

10.274 ± 0.199

8.38 ± 0.14

9.193 ± 0.166

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.505 ± 0.057

7.344 ± 0.149

3.099 ± 0.106

1.99 ± 0.062

4.01 ± 0.083

7.768 ± 0.179

5.677 ± 0.118

5.637 ± 0.106

0.63 ± 0.039

5.698 ± 0.097
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski