Gordonia phage Luker

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Woesvirus; unclassified Woesvirus

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 93 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A514A4W6|A0A514A4W6_9CAUD Uncharacterized protein OS=Gordonia phage Luker OX=2591188 GN=59 PE=4 SV=1
MM1 pKa = 7.33QGPPYY6 pKa = 10.04YY7 pKa = 10.55AGPEE11 pKa = 3.77EE12 pKa = 4.42LGYY15 pKa = 8.86YY16 pKa = 8.06TYY18 pKa = 10.35PDD20 pKa = 3.34SDD22 pKa = 3.95MDD24 pKa = 3.71EE25 pKa = 3.78LAYY28 pKa = 10.42RR29 pKa = 11.84IRR31 pKa = 11.84SRR33 pKa = 11.84LIPIWDD39 pKa = 3.8EE40 pKa = 4.39LEE42 pKa = 4.32VPLLPEE48 pKa = 3.8EE49 pKa = 4.3EE50 pKa = 4.73EE51 pKa = 3.94IVEE54 pKa = 4.09ATEE57 pKa = 4.01FF58 pKa = 3.55

Molecular weight: 6.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A514A4Y8|A0A514A4Y8_9CAUD Uncharacterized protein OS=Gordonia phage Luker OX=2591188 GN=79 PE=4 SV=1
MM1 pKa = 7.2KK2 pKa = 10.46HH3 pKa = 6.32NINGHH8 pKa = 5.38GYY10 pKa = 10.29GVLRR14 pKa = 11.84DD15 pKa = 3.8VKK17 pKa = 8.93VTARR21 pKa = 11.84QSVTATRR28 pKa = 11.84PTPLSANLGNTGAEE42 pKa = 4.15LNQIDD47 pKa = 4.63ANNDD51 pKa = 2.93EE52 pKa = 5.76AINKK56 pKa = 8.28NNWHH60 pKa = 6.8LGGDD64 pKa = 4.27PIVSNDD70 pKa = 3.38PDD72 pKa = 3.28EE73 pKa = 4.5LARR76 pKa = 11.84AFYY79 pKa = 10.68AKK81 pKa = 10.18RR82 pKa = 11.84EE83 pKa = 4.02RR84 pKa = 11.84EE85 pKa = 3.89RR86 pKa = 11.84MIEE89 pKa = 4.51DD90 pKa = 3.3IQDD93 pKa = 3.37APVIRR98 pKa = 11.84TRR100 pKa = 11.84PVRR103 pKa = 11.84PAPKK107 pKa = 10.16KK108 pKa = 8.89SDD110 pKa = 3.12SRR112 pKa = 11.84IARR115 pKa = 11.84EE116 pKa = 3.52RR117 pKa = 11.84ADD119 pKa = 3.68RR120 pKa = 11.84RR121 pKa = 11.84RR122 pKa = 11.84ARR124 pKa = 11.84NKK126 pKa = 9.79ARR128 pKa = 11.84LARR131 pKa = 11.84RR132 pKa = 11.84RR133 pKa = 11.84AAA135 pKa = 3.82

Molecular weight: 15.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

93

0

93

22763

33

3323

244.8

26.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.823 ± 0.961

0.931 ± 0.14

6.062 ± 0.309

6.888 ± 0.344

3.523 ± 0.13

7.952 ± 0.295

1.634 ± 0.171

5.285 ± 0.213

5.078 ± 0.253

7.35 ± 0.232

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.5 ± 0.146

4.059 ± 0.141

5.228 ± 0.335

3.703 ± 0.221

5.733 ± 0.353

6.229 ± 0.193

6.142 ± 0.302

7.148 ± 0.216

1.713 ± 0.124

3.018 ± 0.225
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski