Suid alphaherpesvirus 1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Varicellovirus

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 71 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q5PP75|Q5PP75_9ALPH Immediate-early protein IE180 OS=Suid alphaherpesvirus 1 OX=10345 GN=IE180(TRS) PE=3 SV=1
MM1 pKa = 7.59DD2 pKa = 5.22RR3 pKa = 11.84VWADD7 pKa = 2.66WYY9 pKa = 10.38EE10 pKa = 4.25PVPSPPFSPVDD21 pKa = 3.55PPGPRR26 pKa = 11.84PTTPVPGSSPPSPASTPTPPKK47 pKa = 8.29RR48 pKa = 11.84GRR50 pKa = 11.84YY51 pKa = 7.89VVEE54 pKa = 4.11HH55 pKa = 7.06PEE57 pKa = 4.1YY58 pKa = 10.82GPPPDD63 pKa = 3.94PEE65 pKa = 4.09EE66 pKa = 4.2VRR68 pKa = 11.84VHH70 pKa = 6.28GARR73 pKa = 11.84GPGAFCAAPWRR84 pKa = 11.84PDD86 pKa = 3.04TRR88 pKa = 11.84RR89 pKa = 11.84LGADD93 pKa = 3.12VNRR96 pKa = 11.84LFRR99 pKa = 11.84GIAVSAADD107 pKa = 3.48VTGDD111 pKa = 3.15TRR113 pKa = 11.84ALRR116 pKa = 11.84RR117 pKa = 11.84ALFDD121 pKa = 4.26FYY123 pKa = 11.86AMGYY127 pKa = 6.58TRR129 pKa = 11.84QRR131 pKa = 11.84PSAPCWQALLQLSPEE146 pKa = 3.76QSAPLRR152 pKa = 11.84SALRR156 pKa = 11.84EE157 pKa = 3.93LNEE160 pKa = 3.95RR161 pKa = 11.84DD162 pKa = 3.66VYY164 pKa = 10.87DD165 pKa = 4.16PRR167 pKa = 11.84VLSPPVIEE175 pKa = 4.94GPLFGEE181 pKa = 4.35EE182 pKa = 4.28CDD184 pKa = 4.4VDD186 pKa = 4.21EE187 pKa = 6.2DD188 pKa = 5.04DD189 pKa = 5.38AGSDD193 pKa = 3.3TTVASEE199 pKa = 3.76FSFRR203 pKa = 11.84GSVCEE208 pKa = 5.61DD209 pKa = 3.48DD210 pKa = 6.26GEE212 pKa = 5.66DD213 pKa = 3.76EE214 pKa = 5.57DD215 pKa = 4.98EE216 pKa = 4.74EE217 pKa = 4.59EE218 pKa = 4.97DD219 pKa = 5.04GEE221 pKa = 4.86EE222 pKa = 3.99EE223 pKa = 5.22DD224 pKa = 3.89EE225 pKa = 4.63DD226 pKa = 4.38EE227 pKa = 4.51EE228 pKa = 5.48GEE230 pKa = 4.16EE231 pKa = 4.26EE232 pKa = 3.96EE233 pKa = 5.72DD234 pKa = 3.77EE235 pKa = 4.33EE236 pKa = 4.92EE237 pKa = 4.78EE238 pKa = 4.62EE239 pKa = 4.39GDD241 pKa = 3.53EE242 pKa = 5.3DD243 pKa = 5.58GEE245 pKa = 4.35TDD247 pKa = 3.84VYY249 pKa = 11.45EE250 pKa = 4.72EE251 pKa = 4.71DD252 pKa = 5.59DD253 pKa = 3.79EE254 pKa = 7.03AEE256 pKa = 4.27DD257 pKa = 5.23EE258 pKa = 4.18EE259 pKa = 5.7DD260 pKa = 5.22EE261 pKa = 4.88EE262 pKa = 6.68DD263 pKa = 5.17GDD265 pKa = 4.55DD266 pKa = 4.41FDD268 pKa = 4.74GASVGDD274 pKa = 4.22DD275 pKa = 3.59DD276 pKa = 5.72VFEE279 pKa = 4.61PPEE282 pKa = 4.86DD283 pKa = 4.11GSDD286 pKa = 3.99GEE288 pKa = 5.04GSGSDD293 pKa = 3.8DD294 pKa = 4.01GGDD297 pKa = 4.28GEE299 pKa = 6.4DD300 pKa = 3.72EE301 pKa = 5.91DD302 pKa = 4.83EE303 pKa = 6.67DD304 pKa = 4.12EE305 pKa = 6.69DD306 pKa = 4.69EE307 pKa = 6.73DD308 pKa = 4.48EE309 pKa = 6.34DD310 pKa = 4.7EE311 pKa = 6.26DD312 pKa = 5.53DD313 pKa = 6.14GEE315 pKa = 4.74DD316 pKa = 3.7EE317 pKa = 4.2EE318 pKa = 6.18DD319 pKa = 4.28EE320 pKa = 4.28EE321 pKa = 6.54GEE323 pKa = 4.64DD324 pKa = 3.99GGEE327 pKa = 4.13DD328 pKa = 3.96GEE330 pKa = 5.6DD331 pKa = 3.73GEE333 pKa = 4.74EE334 pKa = 5.4DD335 pKa = 3.54EE336 pKa = 6.37DD337 pKa = 4.29EE338 pKa = 5.0DD339 pKa = 5.64GEE341 pKa = 4.51GEE343 pKa = 4.44EE344 pKa = 4.69GGKK347 pKa = 10.07DD348 pKa = 2.88AARR351 pKa = 11.84RR352 pKa = 11.84GTRR355 pKa = 11.84APTRR359 pKa = 11.84PAAAPP364 pKa = 3.5

Molecular weight: 39.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G3G8W3|G3G8W3_9ALPH DNA primase OS=Suid alphaherpesvirus 1 OX=10345 GN=UL52 PE=3 SV=1
MM1 pKa = 7.81EE2 pKa = 6.23DD3 pKa = 3.58SGNSSGSEE11 pKa = 3.65ASRR14 pKa = 11.84SGSEE18 pKa = 3.41EE19 pKa = 3.47RR20 pKa = 11.84RR21 pKa = 11.84PVRR24 pKa = 11.84EE25 pKa = 3.98RR26 pKa = 11.84LGSRR30 pKa = 11.84PPEE33 pKa = 4.01RR34 pKa = 11.84RR35 pKa = 11.84PVRR38 pKa = 11.84ARR40 pKa = 11.84LGAIRR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84GGRR51 pKa = 11.84GGRR54 pKa = 11.84AARR57 pKa = 11.84QALRR61 pKa = 11.84QRR63 pKa = 11.84RR64 pKa = 11.84RR65 pKa = 11.84QQQQQQRR72 pKa = 11.84QQQHH76 pKa = 3.04QRR78 pKa = 11.84RR79 pKa = 11.84RR80 pKa = 11.84QEE82 pKa = 3.26ADD84 pKa = 3.57RR85 pKa = 11.84PDD87 pKa = 4.37GGPDD91 pKa = 3.32APPDD95 pKa = 3.74RR96 pKa = 11.84LSEE99 pKa = 4.18SARR102 pKa = 11.84AAVSATHH109 pKa = 6.17ARR111 pKa = 11.84VGATRR116 pKa = 11.84VNEE119 pKa = 4.05LFASARR125 pKa = 11.84HH126 pKa = 5.78DD127 pKa = 3.5LSRR130 pKa = 11.84PVFNDD135 pKa = 3.39GFRR138 pKa = 11.84AAGSSPWAAVLEE150 pKa = 4.87FGAEE154 pKa = 3.86QFTPDD159 pKa = 3.16GRR161 pKa = 11.84RR162 pKa = 11.84VTWEE166 pKa = 3.44TLMFHH171 pKa = 6.9GADD174 pKa = 3.25LHH176 pKa = 6.84RR177 pKa = 11.84LFEE180 pKa = 4.36VRR182 pKa = 11.84PHH184 pKa = 5.21ATEE187 pKa = 3.54AARR190 pKa = 11.84VLRR193 pKa = 11.84EE194 pKa = 3.8MVLLNEE200 pKa = 4.7GLTEE204 pKa = 4.17SLASADD210 pKa = 4.06EE211 pKa = 4.03TLTWVKK217 pKa = 10.87LILTKK222 pKa = 10.87GLTLRR227 pKa = 11.84TLDD230 pKa = 4.98PIVATAGAVLQNLRR244 pKa = 11.84LKK246 pKa = 10.67LGPFLRR252 pKa = 11.84CYY254 pKa = 10.85LRR256 pKa = 11.84DD257 pKa = 3.65TPVDD261 pKa = 3.25EE262 pKa = 4.21LVRR265 pKa = 11.84RR266 pKa = 11.84RR267 pKa = 11.84RR268 pKa = 11.84LRR270 pKa = 11.84DD271 pKa = 3.01VRR273 pKa = 11.84CIVTYY278 pKa = 8.89TLVMLARR285 pKa = 11.84IARR288 pKa = 11.84VVEE291 pKa = 4.35RR292 pKa = 11.84GSSCVLPEE300 pKa = 4.69DD301 pKa = 5.18LGDD304 pKa = 3.79SPVPLEE310 pKa = 4.14EE311 pKa = 4.26YY312 pKa = 11.14VPGACLGGIMDD323 pKa = 5.53ALDD326 pKa = 3.55SHH328 pKa = 6.5KK329 pKa = 9.4TGCDD333 pKa = 3.09APTCRR338 pKa = 11.84LTCSYY343 pKa = 10.28TLVPVYY349 pKa = 9.35MHH351 pKa = 6.9GKK353 pKa = 9.54YY354 pKa = 10.31FYY356 pKa = 10.45CNHH359 pKa = 6.76LFF361 pKa = 3.62

Molecular weight: 40.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

69

2

71

35751

63

3084

503.5

53.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

15.614 ± 0.533

1.589 ± 0.121

5.645 ± 0.203

5.77 ± 0.232

3.217 ± 0.202

8.492 ± 0.772

2.447 ± 0.155

1.885 ± 0.144

1.236 ± 0.097

9.818 ± 0.289

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.592 ± 0.126

1.698 ± 0.152

8.341 ± 0.546

2.45 ± 0.143

9.656 ± 0.221

5.046 ± 0.294

4.696 ± 0.211

7.544 ± 0.256

0.962 ± 0.066

2.302 ± 0.172
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski