Alternaria brassicicola fusarivirus 1

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 7.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0U4D408|A0A0U4D408_9VIRU RNA-directed RNA polymerase OS=Alternaria brassicicola fusarivirus 1 OX=1766767 PE=4 SV=1
MM1 pKa = 7.01MVKK4 pKa = 10.31LVPSSRR10 pKa = 11.84QKK12 pKa = 10.5PEE14 pKa = 3.79KK15 pKa = 10.41EE16 pKa = 3.82EE17 pKa = 4.08LASSRR22 pKa = 11.84QEE24 pKa = 4.1QKK26 pKa = 10.47CLSYY30 pKa = 11.14VLSLSGTGFMSVQGGKK46 pKa = 7.39PQCRR50 pKa = 11.84RR51 pKa = 11.84VEE53 pKa = 4.03TCDD56 pKa = 3.54NSEE59 pKa = 4.66CNDD62 pKa = 3.55CEE64 pKa = 4.56LFVPVSS70 pKa = 3.38

Molecular weight: 7.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0U4B4N9|A0A0U4B4N9_9VIRU Uncharacterized protein OS=Alternaria brassicicola fusarivirus 1 OX=1766767 PE=4 SV=1
MM1 pKa = 7.32SANKK5 pKa = 9.68IFEE8 pKa = 4.17GKK10 pKa = 10.18RR11 pKa = 11.84IVKK14 pKa = 9.97ARR16 pKa = 11.84EE17 pKa = 3.52QLASVEE23 pKa = 4.04LTAQQVKK30 pKa = 10.47SSTVWLVRR38 pKa = 11.84EE39 pKa = 4.31PGWIAGEE46 pKa = 4.08EE47 pKa = 4.1KK48 pKa = 10.97LNGWFLEE55 pKa = 4.25IQGSDD60 pKa = 2.43IVLCVTTLFKK70 pKa = 11.58GEE72 pKa = 4.18VTSEE76 pKa = 3.5RR77 pKa = 11.84WFPPSPVFKK86 pKa = 10.0WKK88 pKa = 10.39KK89 pKa = 9.02EE90 pKa = 3.85YY91 pKa = 10.14QSRR94 pKa = 11.84DD95 pKa = 3.16KK96 pKa = 11.09EE97 pKa = 4.51VASEE101 pKa = 3.8EE102 pKa = 4.33AYY104 pKa = 10.11KK105 pKa = 10.64KK106 pKa = 10.84VIVARR111 pKa = 11.84MADD114 pKa = 3.87EE115 pKa = 4.52NLLGYY120 pKa = 10.93YY121 pKa = 10.95DD122 pKa = 4.64MLTPATPLVNRR133 pKa = 11.84LSASFKK139 pKa = 8.0WWKK142 pKa = 8.96TGGNAPIIPFSPTNSKK158 pKa = 10.82SEE160 pKa = 3.82IVGRR164 pKa = 11.84IAHH167 pKa = 6.61FEE169 pKa = 3.99TAFAALNNNPPFALDD184 pKa = 3.18GLLALRR190 pKa = 11.84VLKK193 pKa = 10.71DD194 pKa = 3.27QLPNMKK200 pKa = 10.27DD201 pKa = 2.78RR202 pKa = 11.84GAQNVSRR209 pKa = 11.84FLTTLVKK216 pKa = 10.09AWAMSKK222 pKa = 10.14QPSHH226 pKa = 7.01FKK228 pKa = 11.08GPLSKK233 pKa = 9.94ISYY236 pKa = 7.0PTEE239 pKa = 4.27KK240 pKa = 10.35EE241 pKa = 3.8GLPADD246 pKa = 4.03RR247 pKa = 11.84AKK249 pKa = 10.49IFHH252 pKa = 6.46NLICGKK258 pKa = 10.15GDD260 pKa = 3.8EE261 pKa = 4.37ITRR264 pKa = 11.84GLGFCLWAPPRR275 pKa = 11.84ITVTTDD281 pKa = 2.73AEE283 pKa = 4.79GFTSKK288 pKa = 9.24QRR290 pKa = 11.84KK291 pKa = 7.02KK292 pKa = 10.2HH293 pKa = 4.67EE294 pKa = 4.32EE295 pKa = 3.88KK296 pKa = 10.76KK297 pKa = 10.66IMLDD301 pKa = 3.19IGPDD305 pKa = 3.28IKK307 pKa = 11.18VGAALDD313 pKa = 3.9AEE315 pKa = 4.25PLEE318 pKa = 4.6GSFAEE323 pKa = 4.66SSAAGASRR331 pKa = 11.84SHH333 pKa = 5.91MKK335 pKa = 10.52KK336 pKa = 10.5NSDD339 pKa = 3.49PEE341 pKa = 4.33ANVLKK346 pKa = 10.66EE347 pKa = 4.36SGPKK351 pKa = 8.88PDD353 pKa = 3.63NVQEE357 pKa = 4.17EE358 pKa = 4.98VVDD361 pKa = 5.28EE362 pKa = 4.34AADD365 pKa = 3.44WLKK368 pKa = 11.44NSFTMVNFRR377 pKa = 11.84RR378 pKa = 11.84FYY380 pKa = 10.36RR381 pKa = 11.84RR382 pKa = 11.84VKK384 pKa = 10.63RR385 pKa = 11.84SVTTIKK391 pKa = 10.68EE392 pKa = 4.17SVTYY396 pKa = 10.04EE397 pKa = 3.7GVGINRR403 pKa = 11.84PFMEE407 pKa = 4.43KK408 pKa = 10.55AKK410 pKa = 8.77NTVVFTVTSAVKK422 pKa = 10.28ACATVPIAAAMGVWYY437 pKa = 9.82GVKK440 pKa = 10.27EE441 pKa = 4.04PFVSIKK447 pKa = 10.64DD448 pKa = 3.64FPTPSGKK455 pKa = 9.77VEE457 pKa = 4.15MAKK460 pKa = 10.2HH461 pKa = 5.11VADD464 pKa = 3.75CAVYY468 pKa = 10.33SVTSVVTSTISGIFAGLASATRR490 pKa = 3.68

Molecular weight: 54.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

2082

70

1522

694.0

78.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.916 ± 1.404

0.865 ± 1.023

4.803 ± 0.606

6.148 ± 0.874

5.091 ± 0.392

5.812 ± 0.241

1.873 ± 0.486

5.331 ± 0.928

7.301 ± 0.793

9.75 ± 1.597

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.594 ± 0.274

3.65 ± 0.141

4.947 ± 0.417

2.257 ± 0.755

5.764 ± 0.512

7.349 ± 1.173

6.34 ± 0.556

7.973 ± 0.487

2.354 ± 0.392

2.882 ± 0.605
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski