Siegesbeckia yellow vein betasatellite

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite

Average proteome isoelectric point is 5.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U5ZFG0|U5ZFG0_9VIRU Pathogenicity beta C1 protein OS=Siegesbeckia yellow vein betasatellite OX=1418029 GN=bC1 PE=4 SV=1
MM1 pKa = 7.65TITYY5 pKa = 10.31KK6 pKa = 10.6NGKK9 pKa = 9.28GVTFTINVRR18 pKa = 11.84LSPNLKK24 pKa = 8.96VHH26 pKa = 7.41LSMLCTNEE34 pKa = 4.01PVMSRR39 pKa = 11.84YY40 pKa = 8.47TYY42 pKa = 8.2TLPYY46 pKa = 8.67EE47 pKa = 4.64HH48 pKa = 7.59EE49 pKa = 5.34DD50 pKa = 3.39IIPPFDD56 pKa = 3.58INGTEE61 pKa = 4.07EE62 pKa = 4.08AVKK65 pKa = 9.0EE66 pKa = 4.19TLRR69 pKa = 11.84IMTEE73 pKa = 3.66DD74 pKa = 4.14VYY76 pKa = 11.39FKK78 pKa = 10.64DD79 pKa = 3.09ITKK82 pKa = 10.82EE83 pKa = 3.95EE84 pKa = 4.18VLDD87 pKa = 5.03SIDD90 pKa = 2.84TMMIEE95 pKa = 3.74RR96 pKa = 11.84FHH98 pKa = 8.36FIEE101 pKa = 5.58LDD103 pKa = 3.67TKK105 pKa = 10.94GVTSVRR111 pKa = 11.84SRR113 pKa = 11.84CTLL116 pKa = 3.21

Molecular weight: 13.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U5ZFG0|U5ZFG0_9VIRU Pathogenicity beta C1 protein OS=Siegesbeckia yellow vein betasatellite OX=1418029 GN=bC1 PE=4 SV=1
MM1 pKa = 7.65TITYY5 pKa = 10.31KK6 pKa = 10.6NGKK9 pKa = 9.28GVTFTINVRR18 pKa = 11.84LSPNLKK24 pKa = 8.96VHH26 pKa = 7.41LSMLCTNEE34 pKa = 4.01PVMSRR39 pKa = 11.84YY40 pKa = 8.47TYY42 pKa = 8.2TLPYY46 pKa = 8.67EE47 pKa = 4.64HH48 pKa = 7.59EE49 pKa = 5.34DD50 pKa = 3.39IIPPFDD56 pKa = 3.58INGTEE61 pKa = 4.07EE62 pKa = 4.08AVKK65 pKa = 9.0EE66 pKa = 4.19TLRR69 pKa = 11.84IMTEE73 pKa = 3.66DD74 pKa = 4.14VYY76 pKa = 11.39FKK78 pKa = 10.64DD79 pKa = 3.09ITKK82 pKa = 10.82EE83 pKa = 3.95EE84 pKa = 4.18VLDD87 pKa = 5.03SIDD90 pKa = 2.84TMMIEE95 pKa = 3.74RR96 pKa = 11.84FHH98 pKa = 8.36FIEE101 pKa = 5.58LDD103 pKa = 3.67TKK105 pKa = 10.94GVTSVRR111 pKa = 11.84SRR113 pKa = 11.84CTLL116 pKa = 3.21

Molecular weight: 13.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

116

116

116

116.0

13.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

0.862 ± 0.0

1.724 ± 0.0

6.034 ± 0.0

9.483 ± 0.0

4.31 ± 0.0

3.448 ± 0.0

2.586 ± 0.0

8.621 ± 0.0

6.034 ± 0.0

7.759 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

5.172 ± 0.0

4.31 ± 0.0

4.31 ± 0.0

0.0 ± 0.0

5.172 ± 0.0

5.172 ± 0.0

12.931 ± 0.0

7.759 ± 0.0

0.0 ± 0.0

4.31 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski