Sweet potato leaf curl Georgia virus-[16]

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Sweet potato leaf curl Georgia virus

Average proteome isoelectric point is 7.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8V5Z8|Q8V5Z8_9GEMI Protein V2 OS=Sweet potato leaf curl Georgia virus-[16] OX=223330 GN=AV2 PE=3 SV=1
MM1 pKa = 7.75AEE3 pKa = 4.4LWDD6 pKa = 4.26PLQNPLPDD14 pKa = 3.26TLYY17 pKa = 11.06GFRR20 pKa = 11.84CMLSVKK26 pKa = 9.83YY27 pKa = 10.41LQGILKK33 pKa = 9.89KK34 pKa = 10.45YY35 pKa = 10.35EE36 pKa = 4.24PGTLGFEE43 pKa = 4.51LCSEE47 pKa = 5.38LIRR50 pKa = 11.84IFRR53 pKa = 11.84VRR55 pKa = 11.84QYY57 pKa = 11.69DD58 pKa = 3.54RR59 pKa = 11.84ANSRR63 pKa = 11.84FAEE66 pKa = 4.36ISSLWGEE73 pKa = 4.2TGKK76 pKa = 8.6TEE78 pKa = 4.27AEE80 pKa = 3.93LRR82 pKa = 11.84DD83 pKa = 4.14SYY85 pKa = 11.36RR86 pKa = 11.84ALHH89 pKa = 6.22WEE91 pKa = 4.38CCPNCCPKK99 pKa = 10.53LCPGFKK105 pKa = 9.88RR106 pKa = 11.84RR107 pKa = 11.84PDD109 pKa = 3.47EE110 pKa = 4.28EE111 pKa = 4.75KK112 pKa = 10.81EE113 pKa = 4.18GG114 pKa = 3.68

Molecular weight: 13.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8V5Z8|Q8V5Z8_9GEMI Protein V2 OS=Sweet potato leaf curl Georgia virus-[16] OX=223330 GN=AV2 PE=3 SV=1
MM1 pKa = 7.54TGRR4 pKa = 11.84IPVSRR9 pKa = 11.84RR10 pKa = 11.84FHH12 pKa = 6.81PYY14 pKa = 8.37GGRR17 pKa = 11.84PVRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84LNFEE26 pKa = 3.93TAIVPYY32 pKa = 9.22TGNAVPIAARR42 pKa = 11.84SYY44 pKa = 8.64VPVSRR49 pKa = 11.84GVRR52 pKa = 11.84MKK54 pKa = 10.51RR55 pKa = 11.84KK56 pKa = 9.94RR57 pKa = 11.84GDD59 pKa = 4.09RR60 pKa = 11.84IPKK63 pKa = 9.95GCVGPCKK70 pKa = 10.08VQDD73 pKa = 3.86YY74 pKa = 8.72EE75 pKa = 4.55FKK77 pKa = 10.29MDD79 pKa = 3.56VPHH82 pKa = 7.05TGTFVCVSDD91 pKa = 3.96FTRR94 pKa = 11.84GTGLTHH100 pKa = 7.28RR101 pKa = 11.84LGKK104 pKa = 9.86RR105 pKa = 11.84VCIKK109 pKa = 11.05SMGIDD114 pKa = 3.27GKK116 pKa = 11.25VWMDD120 pKa = 3.75DD121 pKa = 3.28NVAKK125 pKa = 10.24RR126 pKa = 11.84DD127 pKa = 3.48HH128 pKa = 6.56TNIITYY134 pKa = 9.11WLVRR138 pKa = 11.84DD139 pKa = 4.39RR140 pKa = 11.84RR141 pKa = 11.84PNMDD145 pKa = 4.52PLTFAQAFTMYY156 pKa = 10.75DD157 pKa = 3.66NEE159 pKa = 4.15PTTAKK164 pKa = 10.17IRR166 pKa = 11.84MDD168 pKa = 3.48LRR170 pKa = 11.84DD171 pKa = 3.42RR172 pKa = 11.84MQVLKK177 pKa = 10.39KK178 pKa = 10.29FSVTVSGGPYY188 pKa = 8.51NHH190 pKa = 7.45KK191 pKa = 10.06EE192 pKa = 3.61QALVRR197 pKa = 11.84KK198 pKa = 8.79FFKK201 pKa = 10.63GLYY204 pKa = 8.96NHH206 pKa = 5.46VTYY209 pKa = 10.87NHH211 pKa = 6.65KK212 pKa = 10.86EE213 pKa = 3.59EE214 pKa = 4.51AKK216 pKa = 10.79YY217 pKa = 10.68EE218 pKa = 4.05NHH220 pKa = 7.03LEE222 pKa = 4.07NALMLYY228 pKa = 9.88SASSHH233 pKa = 6.23ASNPVYY239 pKa = 9.46QTLRR243 pKa = 11.84CRR245 pKa = 11.84AYY247 pKa = 10.58FYY249 pKa = 10.72DD250 pKa = 3.51SHH252 pKa = 7.95NNN254 pKa = 3.3

Molecular weight: 29.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1111

85

364

185.2

21.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.581 ± 0.843

2.79 ± 0.888

4.95 ± 0.553

5.131 ± 0.815

4.41 ± 0.704

5.761 ± 0.567

3.42 ± 0.391

5.581 ± 0.927

6.301 ± 0.349

7.201 ± 1.314

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.07 ± 0.713

4.95 ± 0.636

6.391 ± 0.84

4.68 ± 0.841

6.391 ± 1.179

8.461 ± 1.395

5.221 ± 1.377

5.491 ± 0.96

1.8 ± 0.363

3.42 ± 0.657
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski