Ferrimonas sediminum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Ferrimonadaceae; Ferrimonas

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3939 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G8Q5R6|A0A1G8Q5R6_9GAMM Positive regulator of sigma(E) RseC/MucC OS=Ferrimonas sediminum OX=718193 GN=SAMN04488540_104191 PE=4 SV=1
MM1 pKa = 7.38KK2 pKa = 10.12RR3 pKa = 11.84HH4 pKa = 5.46KK5 pKa = 9.35TNAITRR11 pKa = 11.84TLGIALVGTAGLYY24 pKa = 10.63CLVSPTTARR33 pKa = 11.84ADD35 pKa = 3.81FFPQQLNQACMAEE48 pKa = 3.81AAGFNLNCTANDD60 pKa = 3.4IQVSQVTNITRR71 pKa = 11.84PDD73 pKa = 3.62GSPGPVEE80 pKa = 4.07CTLGGDD86 pKa = 3.61AEE88 pKa = 4.33FRR90 pKa = 11.84ADD92 pKa = 3.45VTIVTTAKK100 pKa = 9.84RR101 pKa = 11.84RR102 pKa = 11.84YY103 pKa = 9.63DD104 pKa = 3.43YY105 pKa = 10.79TVYY108 pKa = 10.54LPEE111 pKa = 5.14GNWSPQEE118 pKa = 3.98FNTSNTCSVLVGQDD132 pKa = 3.03FTAPGEE138 pKa = 4.13DD139 pKa = 4.33LEE141 pKa = 5.99DD142 pKa = 4.72PGDD145 pKa = 3.64MCADD149 pKa = 3.2ISKK152 pKa = 10.26PPGSHH157 pKa = 7.53LYY159 pKa = 7.88TQQLITLNCVDD170 pKa = 4.25EE171 pKa = 5.03DD172 pKa = 3.74QDD174 pKa = 3.31GRR176 pKa = 11.84AEE178 pKa = 4.0FRR180 pKa = 11.84YY181 pKa = 9.64CAAWDD186 pKa = 3.74NKK188 pKa = 10.68ADD190 pKa = 3.85STPVCDD196 pKa = 3.85GTAATTPVPGTPSKK210 pKa = 10.7CRR212 pKa = 11.84CDD214 pKa = 3.58EE215 pKa = 4.04FNIDD219 pKa = 4.19VFIKK223 pKa = 10.28PDD225 pKa = 3.62PPTINKK231 pKa = 9.74SEE233 pKa = 4.11GSPITRR239 pKa = 11.84PEE241 pKa = 3.88PGGDD245 pKa = 3.46YY246 pKa = 10.71TFTASFTNNSLTSIFIDD263 pKa = 3.74SVADD267 pKa = 4.44EE268 pKa = 4.53IDD270 pKa = 3.38VGGEE274 pKa = 3.92GSFDD278 pKa = 3.55VSLDD282 pKa = 3.69LLNGATQTVDD292 pKa = 3.26PTNTATAEE300 pKa = 4.12GVYY303 pKa = 10.23LKK305 pKa = 10.72SLSASCAQPADD316 pKa = 3.42IGNGAGEE323 pKa = 4.44LVSGATYY330 pKa = 10.63SCTFTVTIVDD340 pKa = 3.46RR341 pKa = 11.84DD342 pKa = 3.82LPNDD346 pKa = 3.63QSPEE350 pKa = 3.99LYY352 pKa = 10.42KK353 pKa = 10.95DD354 pKa = 3.68VIKK357 pKa = 11.06VALTDD362 pKa = 3.6KK363 pKa = 11.05NGNPVVNGATCPADD377 pKa = 3.92LSPIAGDD384 pKa = 3.29HH385 pKa = 6.26CSVLRR390 pKa = 11.84TVDD393 pKa = 3.52VTNLPPSITVSKK405 pKa = 9.51TPSPDD410 pKa = 3.06QVLEE414 pKa = 4.09PGGDD418 pKa = 3.33VTFDD422 pKa = 3.0IVVTSTSGNYY432 pKa = 9.69DD433 pKa = 3.51DD434 pKa = 5.89PLTLTSLMDD443 pKa = 3.67TVFGDD448 pKa = 3.75LNGVGTCATGGSFSLAAPYY467 pKa = 10.35SCSFTEE473 pKa = 4.78TISGNAGDD481 pKa = 3.79VHH483 pKa = 7.0NNTVTAKK490 pKa = 9.97ATDD493 pKa = 3.69NEE495 pKa = 3.93NDD497 pKa = 3.23EE498 pKa = 4.66AQNSDD503 pKa = 3.16GATVNINDD511 pKa = 3.72VPSIITLVKK520 pKa = 8.67TADD523 pKa = 4.43PIEE526 pKa = 4.16VDD528 pKa = 3.57EE529 pKa = 5.05TGDD532 pKa = 3.64DD533 pKa = 3.47PTVFRR538 pKa = 11.84DD539 pKa = 3.0VDD541 pKa = 4.04FTFEE545 pKa = 4.08FSVDD549 pKa = 3.1AAGVDD554 pKa = 3.55DD555 pKa = 3.95VTFNSLTDD563 pKa = 3.95TIFGTLTGEE572 pKa = 4.41CLVDD576 pKa = 3.6TKK578 pKa = 10.95NGSPIGSTPLSGFVLQPGEE597 pKa = 4.45DD598 pKa = 3.61ASCTITKK605 pKa = 10.14ALQGDD610 pKa = 3.82AGDD613 pKa = 3.61VHH615 pKa = 7.69NNVATIKK622 pKa = 11.11GIDD625 pKa = 3.82EE626 pKa = 4.52DD627 pKa = 4.32AQPVMDD633 pKa = 5.29SDD635 pKa = 4.19DD636 pKa = 3.68ATVTFLDD643 pKa = 3.71TGLDD647 pKa = 3.63MEE649 pKa = 4.74QEE651 pKa = 4.44FAAKK655 pKa = 9.45MIAFVRR661 pKa = 11.84ITNGNVDD668 pKa = 3.68TASITGVTIKK678 pKa = 10.61GVNLVAGGGIPGQFEE693 pKa = 4.33VQNDD697 pKa = 3.92AGTSSYY703 pKa = 11.54NPGDD707 pKa = 3.56GPYY710 pKa = 9.83AFCSTGVDD718 pKa = 3.31ILPGDD723 pKa = 3.83TYY725 pKa = 11.69EE726 pKa = 4.9CAFTLKK732 pKa = 10.12LFPGFPPGDD741 pKa = 3.52INFSATGANGLVFTYY756 pKa = 10.51QDD758 pKa = 3.38NEE760 pKa = 4.48GNSVTTNVDD769 pKa = 3.5MNVMTIEE776 pKa = 3.87

Molecular weight: 81.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G8PSR4|A0A1G8PSR4_9GAMM Deoxyribose-phosphate aldolase OS=Ferrimonas sediminum OX=718193 GN=deoC PE=3 SV=1
MM1 pKa = 7.35NLKK4 pKa = 10.01FWQRR8 pKa = 11.84PPLQASPQRR17 pKa = 11.84TLGHH21 pKa = 6.49NDD23 pKa = 2.75ILILPTRR30 pKa = 11.84FGVLFLGLSLVLFLFGSNYY49 pKa = 9.41QNNLILMLAFLMVSLFSSCLLICYY73 pKa = 9.73RR74 pKa = 11.84NLAGVTLSPQPAPGTHH90 pKa = 6.69AGDD93 pKa = 3.7PARR96 pKa = 11.84FPISLSGTGHH106 pKa = 6.66SYY108 pKa = 10.8HH109 pKa = 6.42LQLGFVQGDD118 pKa = 3.54KK119 pKa = 10.94QLLHH123 pKa = 6.38TLSATPSRR131 pKa = 11.84LEE133 pKa = 3.88VAWPSRR139 pKa = 11.84RR140 pKa = 11.84RR141 pKa = 11.84GPLLPPPLIISSRR154 pKa = 11.84YY155 pKa = 8.4PLGLCRR161 pKa = 11.84VWSRR165 pKa = 11.84LALNQAAWVWPRR177 pKa = 11.84PLAGDD182 pKa = 3.97TPQAHH187 pKa = 7.39RR188 pKa = 11.84PRR190 pKa = 11.84QEE192 pKa = 3.72QGDD195 pKa = 3.82KK196 pKa = 10.76HH197 pKa = 6.22QSNSNDD203 pKa = 3.25FDD205 pKa = 4.16GLKK208 pKa = 9.69PWQRR212 pKa = 11.84GHH214 pKa = 6.04SLGRR218 pKa = 11.84VAWKK222 pKa = 10.18QLAQQRR228 pKa = 11.84GMLVKK233 pKa = 10.59QFDD236 pKa = 4.14SPGPNPEE243 pKa = 4.74LLTVDD248 pKa = 3.3NRR250 pKa = 11.84HH251 pKa = 6.12PQLEE255 pKa = 4.32HH256 pKa = 6.76HH257 pKa = 6.54LSEE260 pKa = 4.62LAGRR264 pKa = 11.84LHH266 pKa = 7.33RR267 pKa = 11.84LHH269 pKa = 5.79QQGVPVGLSTDD280 pKa = 3.64TEE282 pKa = 4.58TLMPALGRR290 pKa = 11.84THH292 pKa = 7.26LHH294 pKa = 6.07HH295 pKa = 7.23CLTLLARR302 pKa = 11.84VEE304 pKa = 4.18PHH306 pKa = 6.67ASS308 pKa = 3.09

Molecular weight: 34.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3939

0

3939

1277342

18

2705

324.3

35.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.819 ± 0.052

1.163 ± 0.016

5.657 ± 0.035

5.722 ± 0.036

3.66 ± 0.026

7.606 ± 0.035

2.396 ± 0.025

5.008 ± 0.026

3.908 ± 0.037

11.256 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.694 ± 0.02

3.401 ± 0.026

4.437 ± 0.027

5.274 ± 0.038

5.617 ± 0.033

6.152 ± 0.027

5.043 ± 0.026

7.029 ± 0.034

1.387 ± 0.017

2.772 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski