Dechloromonas sp.

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Azonexaceae; Dechloromonas; unclassified Dechloromonas

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2873 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6N1XG58|A0A6N1XG58_9RHOO Hydrolase or metal-binding protein OS=Dechloromonas sp. OX=1917218 GN=HT580_10515 PE=4 SV=1
MM1 pKa = 7.02NTLLDD6 pKa = 3.82ASISGTSPFAVTLTGLPAGTVVTGMMMTMVGGAPVWSAQGTGDD49 pKa = 3.96NNALQALLNGITVTAPANANSNTGPFGFSATLTTYY84 pKa = 11.22DD85 pKa = 4.33DD86 pKa = 3.69GGGRR90 pKa = 11.84HH91 pKa = 6.64DD92 pKa = 4.69SNLTVSLPVTPVSDD106 pKa = 4.73PIVLVATDD114 pKa = 4.07SNVSEE119 pKa = 5.37DD120 pKa = 3.53SLAPISIALSNVADD134 pKa = 4.09GANTNVVGGKK144 pKa = 9.96VYY146 pKa = 10.64VRR148 pKa = 11.84LDD150 pKa = 3.55EE151 pKa = 4.92SGMEE155 pKa = 3.94AAGGVLRR162 pKa = 11.84FNGNPVAATSVSGVSGIADD181 pKa = 3.17GTYY184 pKa = 9.77FVLNGVSNGATLNLTYY200 pKa = 10.6QPAANASGTVGYY212 pKa = 7.91TAFVQNQEE220 pKa = 3.6TGAANVATSSTSGSFDD236 pKa = 3.19INKK239 pKa = 9.38VNDD242 pKa = 3.97GVTLSAGNVTGAEE255 pKa = 4.06DD256 pKa = 3.73QAVQLAISAALIDD269 pKa = 3.73SGEE272 pKa = 4.41RR273 pKa = 11.84IQSVTLSHH281 pKa = 6.61VPDD284 pKa = 4.72GFQVYY289 pKa = 9.41YY290 pKa = 11.26GNGAPGTAATNMGGGVWSIPASAYY314 pKa = 9.91AVPAYY319 pKa = 9.56ISLVPPPNWSGTVSGVTADD338 pKa = 3.17VWSGEE343 pKa = 4.18TGLDD347 pKa = 3.38QTVTSANFDD356 pKa = 3.52VTFNGVADD364 pKa = 5.79GILISPTLSFGNEE377 pKa = 3.98GQVVPLNLNSAMPDD391 pKa = 3.02MDD393 pKa = 3.66GSEE396 pKa = 4.08TAIITVKK403 pKa = 10.85GLGSFAAFYY412 pKa = 10.52AGSSLLSATYY422 pKa = 10.6DD423 pKa = 3.49SGLDD427 pKa = 3.39TYY429 pKa = 9.61TLSGLTPAQVSSLGVIQKK447 pKa = 10.41DD448 pKa = 3.71GSFDD452 pKa = 4.08LVITAQTADD461 pKa = 3.66SPGGNLSAVVNASMHH476 pKa = 5.98VDD478 pKa = 3.77INPVAATTGDD488 pKa = 3.63DD489 pKa = 3.19RR490 pKa = 11.84LLYY493 pKa = 10.64DD494 pKa = 4.06GSALNGLVGSTPSNSAA510 pKa = 3.0

Molecular weight: 50.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6N1XEQ9|A0A6N1XEQ9_9RHOO YceI family protein OS=Dechloromonas sp. OX=1917218 GN=HT580_07725 PE=4 SV=1
MM1 pKa = 6.82STWIEE6 pKa = 3.85SSIPFVAIFVMLIVGTDD23 pKa = 3.2LRR25 pKa = 11.84LADD28 pKa = 4.05FQRR31 pKa = 11.84VRR33 pKa = 11.84RR34 pKa = 11.84YY35 pKa = 9.74LVLVPGIVCGQWLLLIGVAGLVGRR59 pKa = 11.84LLDD62 pKa = 4.78LPPGMTGGAILLAAAPVAAMSGFYY86 pKa = 9.06TQLAGGHH93 pKa = 6.63LALAVTVAAVSNLLAPIVTPVAASLGFWLFLDD125 pKa = 3.62SDD127 pKa = 4.18KK128 pKa = 11.8AMEE131 pKa = 4.41LPMLKK136 pKa = 10.01VALQAIVGLLLPLLAGMLLRR156 pKa = 11.84HH157 pKa = 6.27CAPRR161 pKa = 11.84WVTRR165 pKa = 11.84AAXLQGIAIGAVIALLGAVIVDD187 pKa = 3.22QXRR190 pKa = 11.84SNRR193 pKa = 11.84EE194 pKa = 3.45QFVLLFGVSLLFTLATLAAGWVALRR219 pKa = 11.84LPACSTEE226 pKa = 3.85DD227 pKa = 2.93RR228 pKa = 11.84XRR230 pKa = 11.84AALGFPARR238 pKa = 11.84NVAVATLAATSVLGKK253 pKa = 10.24AAVVTFIAVLFTTQLTLLLSLALWLRR279 pKa = 11.84KK280 pKa = 9.2RR281 pKa = 11.84AA282 pKa = 3.58

Molecular weight: 29.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2873

0

2873

878941

37

1957

305.9

33.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.749 ± 0.07

1.092 ± 0.018

5.284 ± 0.031

5.706 ± 0.042

3.799 ± 0.032

8.046 ± 0.044

2.215 ± 0.021

5.139 ± 0.029

3.825 ± 0.041

10.723 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.429 ± 0.024

2.957 ± 0.029

5.016 ± 0.031

3.573 ± 0.025

6.826 ± 0.045

5.174 ± 0.032

4.893 ± 0.033

7.171 ± 0.041

1.414 ± 0.021

2.396 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski