Salmonella phage PVPSE1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Vequintavirinae; Seunavirus; Salmonella virus PVPSE1

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 244 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G3BM51|G3BM51_9CAUD Uncharacterized protein 185 OS=Salmonella phage PVPSE1 OX=889338 GN=185 PE=4 SV=1
MM1 pKa = 7.83EE2 pKa = 4.78LTDD5 pKa = 5.14LYY7 pKa = 11.14SDD9 pKa = 3.62APIRR13 pKa = 11.84LSPEE17 pKa = 3.66EE18 pKa = 4.15YY19 pKa = 10.49KK20 pKa = 11.01NSEE23 pKa = 4.13LVKK26 pKa = 10.42HH27 pKa = 5.19VVAMEE32 pKa = 3.96FEE34 pKa = 4.27FFEE37 pKa = 4.35YY38 pKa = 10.73LADD41 pKa = 4.78FDD43 pKa = 6.83DD44 pKa = 5.41DD45 pKa = 4.56FNSDD49 pKa = 3.43GLYY52 pKa = 10.72GAA54 pKa = 5.36

Molecular weight: 6.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G3BM69|G3BM69_9CAUD Uncharacterized protein 203 OS=Salmonella phage PVPSE1 OX=889338 GN=203 PE=4 SV=1
MM1 pKa = 7.53KK2 pKa = 10.48NYY4 pKa = 10.0FNSRR8 pKa = 11.84ALARR12 pKa = 11.84TAAKK16 pKa = 10.68ANGGKK21 pKa = 10.55VIDD24 pKa = 4.7NGTAAPAGKK33 pKa = 9.06RR34 pKa = 11.84WQVIPGVMVEE44 pKa = 4.99AIQDD48 pKa = 3.72TADD51 pKa = 2.94QRR53 pKa = 11.84AAMEE57 pKa = 4.28SAPALVVTLEE67 pKa = 3.85IKK69 pKa = 10.2AGYY72 pKa = 9.74RR73 pKa = 11.84NRR75 pKa = 11.84QAARR79 pKa = 11.84VSYY82 pKa = 10.98VHH84 pKa = 7.27DD85 pKa = 4.8ANGKK89 pKa = 8.24PIPVTHH95 pKa = 6.8KK96 pKa = 9.92RR97 pKa = 11.84SQIAARR103 pKa = 11.84LAAHH107 pKa = 6.73MARR110 pKa = 4.5

Molecular weight: 11.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

244

0

244

44306

38

929

181.6

20.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.153 ± 0.2

1.239 ± 0.077

6.577 ± 0.148

6.609 ± 0.179

4.239 ± 0.122

7.403 ± 0.306

1.79 ± 0.089

5.688 ± 0.133

6.875 ± 0.2

7.886 ± 0.157

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.954 ± 0.103

4.724 ± 0.13

3.74 ± 0.142

3.53 ± 0.115

4.875 ± 0.147

5.848 ± 0.169

5.909 ± 0.217

7.229 ± 0.157

1.756 ± 0.09

3.977 ± 0.111
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski