Dictyobacter sp. Uno17

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Dictyobacteraceae; Dictyobacter

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5628 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5A5TKA2|A0A5A5TKA2_9CHLR Uncharacterized protein OS=Dictyobacter sp. Uno17 OX=2014874 GN=yisX PE=4 SV=1
MM1 pKa = 7.64QEE3 pKa = 3.82ALKK6 pKa = 10.81ANPYY10 pKa = 10.17VYY12 pKa = 11.04ADD14 pKa = 3.63NNPVNEE20 pKa = 4.05VDD22 pKa = 3.6PNGAFSLTDD31 pKa = 3.05ACLVDD36 pKa = 4.74LVGLGGITSAVTGLFSFLGSSGAGGAVGIPLAAATGPGDD75 pKa = 3.52VAIAGLAASLFIGLAVTSSIIGIIGVIEE103 pKa = 4.07GVPTAKK109 pKa = 10.04KK110 pKa = 10.62DD111 pKa = 3.46CGLL114 pKa = 3.8

Molecular weight: 11.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5A5T5V4|A0A5A5T5V4_9CHLR NADH-quinone oxidoreductase subunit K OS=Dictyobacter sp. Uno17 OX=2014874 GN=nuoK1 PE=3 SV=1
MM1 pKa = 7.34SVALSPTFQVATIKK15 pKa = 10.32MLTIPTTIRR24 pKa = 11.84PSRR27 pKa = 11.84KK28 pKa = 8.35RR29 pKa = 11.84LRR31 pKa = 11.84ALRR34 pKa = 11.84VLSQRR39 pKa = 11.84LSIGLTPHH47 pKa = 7.02

Molecular weight: 5.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5628

0

5628

1921236

40

7655

341.4

37.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.274 ± 0.034

0.964 ± 0.01

4.83 ± 0.023

5.752 ± 0.037

3.595 ± 0.02

6.837 ± 0.032

2.713 ± 0.02

6.15 ± 0.026

3.383 ± 0.026

10.99 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.227 ± 0.013

3.497 ± 0.026

5.028 ± 0.027

5.412 ± 0.035

5.76 ± 0.033

6.238 ± 0.027

6.211 ± 0.029

6.593 ± 0.03

1.4 ± 0.013

3.141 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski