Dyadobacter koreensis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5986 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H6XL40|A0A1H6XL40_9BACT 50S ribosomal protein L20 OS=Dyadobacter koreensis OX=408657 GN=rplT PE=3 SV=1
MM1 pKa = 8.24DD2 pKa = 4.91SFLEE6 pKa = 4.39KK7 pKa = 10.6YY8 pKa = 10.03SPKK11 pKa = 10.0IEE13 pKa = 4.36NEE15 pKa = 3.85PASLQDD21 pKa = 3.28IAQLEE26 pKa = 4.37AEE28 pKa = 4.46LGIRR32 pKa = 11.84LPSDD36 pKa = 3.96FSTFLRR42 pKa = 11.84NVNGFEE48 pKa = 4.05GFIGNSYY55 pKa = 10.97AIFAPLQAIYY65 pKa = 10.98QMTLDD70 pKa = 4.16YY71 pKa = 10.89CAEE74 pKa = 4.64LYY76 pKa = 9.82PWAVFIGSNGGLEE89 pKa = 3.96MFIIDD94 pKa = 4.3TRR96 pKa = 11.84SSPYY100 pKa = 10.45QFGLLPFIADD110 pKa = 3.59DD111 pKa = 3.79SDD113 pKa = 4.05FVGFGQSLEE122 pKa = 4.15QFLEE126 pKa = 4.05MLANLL131 pKa = 4.27

Molecular weight: 14.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H6R6A5|A0A1H6R6A5_9BACT Uncharacterized protein OS=Dyadobacter koreensis OX=408657 GN=SAMN04487995_1058 PE=4 SV=1
MM1 pKa = 7.45AASKK5 pKa = 10.5KK6 pKa = 9.99KK7 pKa = 10.72RR8 pKa = 11.84NTKK11 pKa = 9.79KK12 pKa = 10.68NKK14 pKa = 10.21LGVKK18 pKa = 10.16NSLVNNINARR28 pKa = 11.84KK29 pKa = 9.73KK30 pKa = 10.56KK31 pKa = 9.01GTSRR35 pKa = 11.84PKK37 pKa = 10.24KK38 pKa = 9.91KK39 pKa = 9.29KK40 pKa = 7.84TVSKK44 pKa = 10.67KK45 pKa = 10.71SYY47 pKa = 10.36TKK49 pKa = 9.61MQNNWGKK56 pKa = 10.38KK57 pKa = 8.82RR58 pKa = 11.84STKK61 pKa = 8.93NRR63 pKa = 11.84KK64 pKa = 9.21RR65 pKa = 11.84KK66 pKa = 7.53TKK68 pKa = 10.2RR69 pKa = 11.84KK70 pKa = 8.93SRR72 pKa = 11.84KK73 pKa = 8.85

Molecular weight: 8.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5986

0

5986

2116298

38

2392

353.5

39.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.14 ± 0.033

0.718 ± 0.01

5.336 ± 0.023

5.976 ± 0.036

5.097 ± 0.022

6.921 ± 0.032

1.788 ± 0.017

7.14 ± 0.026

6.863 ± 0.026

9.513 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.253 ± 0.015

5.362 ± 0.028

3.894 ± 0.019

3.665 ± 0.017

4.215 ± 0.019

6.848 ± 0.026

5.68 ± 0.027

6.396 ± 0.021

1.254 ± 0.013

3.944 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski