Prevotella corporis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales;

Average proteome isoelectric point is 6.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2956 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A133PSX3|A0A133PSX3_9BACT YqeY-like protein OS=Prevotella corporis OX=28128 GN=HMPREF3226_02801 PE=4 SV=1
MM1 pKa = 7.23TKK3 pKa = 10.1VFVMSTCPDD12 pKa = 3.51CTQVKK17 pKa = 9.72AQLAGNPNYY26 pKa = 10.32EE27 pKa = 4.5LIDD30 pKa = 3.5IGEE33 pKa = 4.24HH34 pKa = 5.26VRR36 pKa = 11.84NLKK39 pKa = 10.12QFLTLRR45 pKa = 11.84DD46 pKa = 3.99SNPAFDD52 pKa = 4.6DD53 pKa = 3.78ARR55 pKa = 11.84AHH57 pKa = 6.37GYY59 pKa = 10.07VGIPCFVLDD68 pKa = 4.85DD69 pKa = 4.16GTVSFSIDD77 pKa = 3.51DD78 pKa = 3.83VVLEE82 pKa = 4.56DD83 pKa = 3.84TPEE86 pKa = 4.17GASCNLDD93 pKa = 3.25GTGCC97 pKa = 3.64

Molecular weight: 10.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A133PW65|A0A133PW65_9BACT Uncharacterized protein OS=Prevotella corporis OX=28128 GN=HMPREF3226_02334 PE=4 SV=1
MM1 pKa = 7.35NGHH4 pKa = 6.53MPNCQHH10 pKa = 5.37ITARR14 pKa = 11.84HH15 pKa = 4.5LTAIIAALLLLVMEE29 pKa = 5.69GCTSSRR35 pKa = 11.84FGEE38 pKa = 4.69GGHH41 pKa = 6.21TFRR44 pKa = 11.84QDD46 pKa = 2.83NPEE49 pKa = 3.38IDD51 pKa = 3.57RR52 pKa = 11.84RR53 pKa = 11.84FQIADD58 pKa = 3.38LGGQQLEE65 pKa = 3.98AATRR69 pKa = 11.84YY70 pKa = 9.97GLSKK74 pKa = 10.17PIRR77 pKa = 11.84RR78 pKa = 11.84RR79 pKa = 11.84SGIWLRR85 pKa = 11.84AWRR88 pKa = 11.84LRR90 pKa = 11.84KK91 pKa = 9.49IKK93 pKa = 9.18TNRR96 pKa = 11.84YY97 pKa = 8.44YY98 pKa = 11.26LLDD101 pKa = 4.33PMPHH105 pKa = 6.2SNPYY109 pKa = 8.14LTSGGKK115 pKa = 8.42WVLKK119 pKa = 9.53TIAKK123 pKa = 9.94RR124 pKa = 11.84FQKK127 pKa = 10.44KK128 pKa = 8.5LRR130 pKa = 11.84KK131 pKa = 9.34AGYY134 pKa = 8.0RR135 pKa = 11.84EE136 pKa = 3.54HH137 pKa = 7.47RR138 pKa = 11.84IIVTSMLRR146 pKa = 11.84TRR148 pKa = 11.84EE149 pKa = 4.23DD150 pKa = 2.68IGGLKK155 pKa = 10.11KK156 pKa = 10.28INRR159 pKa = 11.84VAATNSSHH167 pKa = 6.78MYY169 pKa = 8.37GTTFDD174 pKa = 3.5VSFTRR179 pKa = 11.84FNRR182 pKa = 11.84ISMDD186 pKa = 2.72GMQPSNRR193 pKa = 11.84LMANLLGEE201 pKa = 4.62VICEE205 pKa = 3.8LRR207 pKa = 11.84EE208 pKa = 4.0EE209 pKa = 4.81GEE211 pKa = 3.93CWIIFEE217 pKa = 4.55RR218 pKa = 11.84SQHH221 pKa = 5.68CFHH224 pKa = 6.02VTARR228 pKa = 11.84RR229 pKa = 3.41

Molecular weight: 26.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2956

0

2956

835971

23

2529

282.8

32.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.742 ± 0.042

1.276 ± 0.018

5.607 ± 0.034

6.348 ± 0.046

4.621 ± 0.031

6.526 ± 0.043

2.038 ± 0.019

7.209 ± 0.046

7.196 ± 0.04

8.881 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.856 ± 0.024

5.352 ± 0.042

3.52 ± 0.023

3.652 ± 0.026

4.79 ± 0.04

6.157 ± 0.034

5.6 ± 0.039

6.277 ± 0.035

1.1 ± 0.017

4.251 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski