Rice hoja blanca tenuivirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus

Average proteome isoelectric point is 6.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2H5CMS9|A0A2H5CMS9_9VIRU NS3 protein OS=Rice hoja blanca tenuivirus OX=12332 PE=4 SV=1
MM1 pKa = 8.12DD2 pKa = 4.8FLKK5 pKa = 10.2TDD7 pKa = 3.35VSVGPIEE14 pKa = 4.09GLNYY18 pKa = 9.71RR19 pKa = 11.84RR20 pKa = 11.84LYY22 pKa = 10.73DD23 pKa = 3.42ILPNKK28 pKa = 10.0VSDD31 pKa = 4.57NITLPDD37 pKa = 4.28LKK39 pKa = 11.15NPDD42 pKa = 3.55KK43 pKa = 10.87VTEE46 pKa = 4.16EE47 pKa = 3.89NKK49 pKa = 10.68KK50 pKa = 10.84LILCGFIYY58 pKa = 10.39VAYY61 pKa = 9.2HH62 pKa = 6.18HH63 pKa = 7.17PIEE66 pKa = 4.48TDD68 pKa = 3.1PDD70 pKa = 3.6FTSVHH75 pKa = 5.02KK76 pKa = 10.29HH77 pKa = 4.52MPGISEE83 pKa = 4.3SFLEE87 pKa = 4.36HH88 pKa = 7.3LLGTDD93 pKa = 3.58EE94 pKa = 4.74SNNTIDD100 pKa = 4.6LGKK103 pKa = 10.64LFDD106 pKa = 4.05ILQEE110 pKa = 4.2RR111 pKa = 11.84LGDD114 pKa = 4.18WITMNFLKK122 pKa = 10.71HH123 pKa = 5.63NNRR126 pKa = 11.84MSKK129 pKa = 10.49DD130 pKa = 3.53QIKK133 pKa = 8.01TLCEE137 pKa = 4.15TIVDD141 pKa = 4.29LAKK144 pKa = 10.91AEE146 pKa = 4.39GGDD149 pKa = 3.66TEE151 pKa = 4.71IYY153 pKa = 8.75EE154 pKa = 4.55AVWKK158 pKa = 10.6KK159 pKa = 9.58MPAYY163 pKa = 10.47YY164 pKa = 10.31SILLQQILHH173 pKa = 6.51KK174 pKa = 10.88

Molecular weight: 20.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q08349|Q08349_9VIRU Movement protein NS4 OS=Rice hoja blanca tenuivirus OX=12332 GN=NS4vc PE=4 SV=1
MM1 pKa = 7.49SISRR5 pKa = 11.84YY6 pKa = 9.93NPFKK10 pKa = 10.8KK11 pKa = 10.42SVILTDD17 pKa = 4.08DD18 pKa = 3.46LSEE21 pKa = 4.01RR22 pKa = 11.84AAEE25 pKa = 4.16KK26 pKa = 10.66FEE28 pKa = 4.35KK29 pKa = 10.28KK30 pKa = 9.84NKK32 pKa = 9.82RR33 pKa = 11.84KK34 pKa = 9.3LALKK38 pKa = 10.0NRR40 pKa = 11.84PLTKK44 pKa = 10.6GRR46 pKa = 11.84MTIDD50 pKa = 2.83AAATVLGLEE59 pKa = 4.45PFSFADD65 pKa = 3.58VRR67 pKa = 11.84ANSYY71 pKa = 11.86DD72 pKa = 3.51MFVAKK77 pKa = 9.87QDD79 pKa = 3.61YY80 pKa = 9.58SVCANRR86 pKa = 11.84RR87 pKa = 11.84THH89 pKa = 5.79FTIDD93 pKa = 3.17SSPLFFRR100 pKa = 11.84KK101 pKa = 9.28PLQTFPFFRR110 pKa = 11.84IATFAVIWLGIKK122 pKa = 9.91GRR124 pKa = 11.84ANGTVTFRR132 pKa = 11.84IIDD135 pKa = 3.47RR136 pKa = 11.84SYY138 pKa = 10.63TDD140 pKa = 3.49PEE142 pKa = 4.02RR143 pKa = 11.84QVEE146 pKa = 4.22VEE148 pKa = 3.5ICYY151 pKa = 10.5PMAKK155 pKa = 9.0TFAVLGSLPNFMSYY169 pKa = 10.63EE170 pKa = 4.35DD171 pKa = 3.95ADD173 pKa = 3.73KK174 pKa = 10.08MQVEE178 pKa = 4.57IVIKK182 pKa = 10.44DD183 pKa = 3.71DD184 pKa = 3.76SVQNCIISRR193 pKa = 11.84SLWFWGIEE201 pKa = 3.93RR202 pKa = 11.84TDD204 pKa = 3.94FPVPMEE210 pKa = 4.12SQKK213 pKa = 9.62TVMFEE218 pKa = 4.16FEE220 pKa = 4.63PLPDD224 pKa = 2.95RR225 pKa = 11.84TVNHH229 pKa = 6.73LSKK232 pKa = 10.77FKK234 pKa = 11.17NFTTDD239 pKa = 2.74VVQRR243 pKa = 11.84AVTTAFTTRR252 pKa = 11.84EE253 pKa = 4.02ALEE256 pKa = 4.57DD257 pKa = 3.46KK258 pKa = 10.64PGIEE262 pKa = 4.35FGVVKK267 pKa = 10.62QPGVPLVQKK276 pKa = 10.0KK277 pKa = 9.21RR278 pKa = 11.84VMIEE282 pKa = 3.52AA283 pKa = 4.29

Molecular weight: 32.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

4931

174

2918

704.4

80.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.847 ± 0.474

1.987 ± 0.822

6.469 ± 0.167

6.388 ± 0.6

4.502 ± 0.372

4.279 ± 0.454

2.373 ± 0.306

6.814 ± 0.588

7.869 ± 0.387

9.592 ± 0.492

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.022 ± 0.182

4.786 ± 0.398

3.955 ± 0.533

2.88 ± 0.384

4.421 ± 0.568

7.747 ± 0.586

6.246 ± 0.624

6.591 ± 0.557

1.034 ± 0.129

4.198 ± 0.29
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski