Allium virus X

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus

Average proteome isoelectric point is 7.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C0L9E3|C0L9E3_9VIRU Tgb2 OS=Allium virus X OX=317027 PE=4 SV=1
MM1 pKa = 6.83NTLVDD6 pKa = 3.93TLVEE10 pKa = 4.03AGFIRR15 pKa = 11.84THH17 pKa = 6.4EE18 pKa = 4.37PLSNPLVVHH27 pKa = 6.45AVAGAGKK34 pKa = 10.02SSLIRR39 pKa = 11.84RR40 pKa = 11.84LLEE43 pKa = 3.58TDD45 pKa = 2.75ATFRR49 pKa = 11.84AFTRR53 pKa = 11.84GPPDD57 pKa = 4.25PPSLDD62 pKa = 3.08ATAIQAFQPNPPSHH76 pKa = 7.03LFNILDD82 pKa = 4.06EE83 pKa = 4.54YY84 pKa = 10.53PAGEE88 pKa = 4.58VKK90 pKa = 10.82GPWAALFADD99 pKa = 4.81PLQHH103 pKa = 6.62RR104 pKa = 11.84AHH106 pKa = 7.18PRR108 pKa = 11.84RR109 pKa = 11.84PHH111 pKa = 5.97FIKK114 pKa = 10.47RR115 pKa = 11.84CSHH118 pKa = 6.45RR119 pKa = 11.84LSASTAALLTSLGIPITGTGQGNFTSAHH147 pKa = 5.57GVFEE151 pKa = 4.59GPLIGKK157 pKa = 9.52IISLDD162 pKa = 3.43NHH164 pKa = 6.32ISLLLSNHH172 pKa = 5.55SVPYY176 pKa = 8.87ATPDD180 pKa = 3.36DD181 pKa = 3.9VLGQEE186 pKa = 4.51FPITTVISALPLHH199 pKa = 6.47AVCDD203 pKa = 4.02KK204 pKa = 10.6VGLYY208 pKa = 9.8IALSRR213 pKa = 11.84HH214 pKa = 4.35TSEE217 pKa = 5.54LHH219 pKa = 5.31VLCPNPPHH227 pKa = 6.82PTTT230 pKa = 4.01

Molecular weight: 24.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C0L9E4|C0L9E4_9VIRU Movement protein TGBp3 OS=Allium virus X OX=317027 PE=3 SV=1
MM1 pKa = 7.42SSAPIHH7 pKa = 5.85LTPPPDD13 pKa = 3.29HH14 pKa = 7.08SKK16 pKa = 10.46VFISVVVGVSIALCVFLLNKK36 pKa = 10.32NYY38 pKa = 10.27LPHH41 pKa = 8.18VGDD44 pKa = 4.23NLHH47 pKa = 6.43SLPHH51 pKa = 6.52GGTYY55 pKa = 10.35CDD57 pKa = 3.47GTKK60 pKa = 10.3SINYY64 pKa = 8.48RR65 pKa = 11.84GPSHH69 pKa = 6.34HH70 pKa = 7.04TSSTTPLWAVIATLTLPLAIFLLNARR96 pKa = 11.84RR97 pKa = 11.84TSHH100 pKa = 6.98HH101 pKa = 5.23STLRR105 pKa = 11.84CGHH108 pKa = 7.07AACASGLDD116 pKa = 3.76STNPP120 pKa = 3.38

Molecular weight: 12.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2359

83

1701

471.8

52.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.351 ± 0.688

1.78 ± 0.454

4.621 ± 0.6

5.087 ± 1.187

4.833 ± 0.681

4.833 ± 0.522

4.451 ± 0.927

4.663 ± 0.435

5.256 ± 1.068

10.725 ± 0.641

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.865 ± 0.423

4.154 ± 0.293

7.164 ± 1.107

4.621 ± 0.907

4.409 ± 0.53

6.825 ± 0.694

7.885 ± 1.028

4.663 ± 0.717

1.145 ± 0.179

2.671 ± 0.435
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski