Gulbenkiania indica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Gulbenkiania

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2697 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K6H6S7|A0A0K6H6S7_9NEIS Uncharacterized protein OS=Gulbenkiania indica OX=375574 GN=Ga0061063_2760 PE=4 SV=1
MM1 pKa = 7.36NAPTEE6 pKa = 4.29MPTPINFTNSACDD19 pKa = 3.37KK20 pKa = 10.56VRR22 pKa = 11.84DD23 pKa = 4.4LIAEE27 pKa = 4.23EE28 pKa = 4.66GNPDD32 pKa = 2.99LKK34 pKa = 11.14LRR36 pKa = 11.84VFVTGGGCSGFQYY49 pKa = 10.94GFTFDD54 pKa = 4.65EE55 pKa = 4.88IANEE59 pKa = 4.13DD60 pKa = 3.34DD61 pKa = 3.58TAIEE65 pKa = 4.16RR66 pKa = 11.84EE67 pKa = 4.44GVTFLVDD74 pKa = 3.53PMSYY78 pKa = 10.19QYY80 pKa = 11.57LVGAEE85 pKa = 3.7IDD87 pKa = 3.88YY88 pKa = 11.15QEE90 pKa = 4.55SLEE93 pKa = 4.16GSQFVIRR100 pKa = 11.84NPNAQTTCGCGSSFSVV116 pKa = 3.54

Molecular weight: 12.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0K6GY63|A0A0K6GY63_9NEIS Biotin synthase OS=Gulbenkiania indica OX=375574 GN=bioB PE=3 SV=1
MM1 pKa = 8.13RR2 pKa = 11.84MLTPMRR8 pKa = 11.84MLTPMRR14 pKa = 11.84MLTPMRR20 pKa = 11.84MLTPMPTLTLTRR32 pKa = 11.84MLTPMLMPMPMLTRR46 pKa = 11.84MLTRR50 pKa = 11.84MPMLTRR56 pKa = 11.84MPMLTPMPMLTPMLTLTLTPMLTPMLTPMPMPMPTPMLTPMPTLVV101 pKa = 3.46

Molecular weight: 11.69 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2697

0

2697

858314

34

1603

318.2

34.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.195 ± 0.065

0.925 ± 0.016

5.132 ± 0.034

5.953 ± 0.047

3.562 ± 0.035

8.012 ± 0.04

2.269 ± 0.023

4.33 ± 0.035

3.204 ± 0.043

11.425 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.467 ± 0.023

2.619 ± 0.027

5.202 ± 0.037

3.783 ± 0.034

7.195 ± 0.046

5.064 ± 0.036

5.158 ± 0.033

7.682 ± 0.044

1.386 ± 0.021

2.436 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski