Acetobacter sp. KACC 21233

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; unclassified Acetobacter

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2638 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C1YQA3|A0A5C1YQA3_9PROT LptF/LptG family permease OS=Acetobacter sp. KACC 21233 OX=2592655 GN=FLP30_09230 PE=4 SV=1
MM1 pKa = 7.75AGHH4 pKa = 6.93IPISQIVQVTPGVLAAGNGLNNLSGLIATTASAALAAGAVQSFASADD51 pKa = 3.49AVGTAFGDD59 pKa = 3.53TSMLYY64 pKa = 10.75QMAKK68 pKa = 10.26VYY70 pKa = 10.27FSGYY74 pKa = 7.35STAVMTPGTLYY85 pKa = 10.69VGAIAASASGATATASLGTVTEE107 pKa = 4.33HH108 pKa = 5.71TVATVAVDD116 pKa = 3.44AAGTGYY122 pKa = 11.22AVGDD126 pKa = 3.65TASFSGGKK134 pKa = 8.15ATISTVGTDD143 pKa = 3.81GAVTALTLQSATAQSDD159 pKa = 3.84DD160 pKa = 3.7PAGTGLATTTNGSGTGLTVTTTSTAATVSSGAVSSITVNAGGAGYY205 pKa = 6.63TTAPTVTLTGGGGTGAEE222 pKa = 4.08ASATVSGGAVTAITVTAGGSGYY244 pKa = 9.24TSAPAVTITAAASEE258 pKa = 4.36DD259 pKa = 3.52MAAQLSALRR268 pKa = 11.84SANGGWNGLAFDD280 pKa = 5.13AEE282 pKa = 4.39LSVADD287 pKa = 4.39KK288 pKa = 10.69QAAAQWVSQQNGQIFAPLMDD308 pKa = 5.0SDD310 pKa = 4.58SGAATSGSDD319 pKa = 3.1TAFGVWLGAQSISGVTAIYY338 pKa = 7.68DD339 pKa = 3.86TSPLSCALALGWMASLSFGTTDD361 pKa = 3.9GRR363 pKa = 11.84QTLAFVQDD371 pKa = 3.68ASGLITPAVTDD382 pKa = 3.55GTTAANLIANGYY394 pKa = 8.71SFYY397 pKa = 11.22GSYY400 pKa = 10.82AGGADD405 pKa = 3.18TFQFMRR411 pKa = 11.84PGQVSGKK418 pKa = 9.05FLWADD423 pKa = 3.37SFVNQIWLNANLTSDD438 pKa = 5.15LVNLLLNTGNIPYY451 pKa = 8.52NTEE454 pKa = 3.42GDD456 pKa = 4.07TLVNAAVQDD465 pKa = 4.3TITEE469 pKa = 4.09ALAFGAIQAGVALTTLQKK487 pKa = 10.49QQINNAAGVTTAADD501 pKa = 3.44NVVNRR506 pKa = 11.84GWYY509 pKa = 7.38FQPNVSTAAASYY521 pKa = 9.83RR522 pKa = 11.84VARR525 pKa = 11.84TTPPARR531 pKa = 11.84LWYY534 pKa = 10.27ADD536 pKa = 3.66GEE538 pKa = 4.88SVQSIQLNSVEE549 pKa = 4.35VQQ551 pKa = 2.97

Molecular weight: 54.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C1YNM1|A0A5C1YNM1_9PROT ABC transporter permease subunit OS=Acetobacter sp. KACC 21233 OX=2592655 GN=FLP30_02880 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.2QPSRR9 pKa = 11.84LVRR12 pKa = 11.84KK13 pKa = 8.99RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.7GFRR19 pKa = 11.84SRR21 pKa = 11.84MATVGGRR28 pKa = 11.84RR29 pKa = 11.84ILGNRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.79GRR39 pKa = 11.84KK40 pKa = 8.87RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2638

0

2638

885515

26

1708

335.7

36.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.067 ± 0.069

1.063 ± 0.016

5.419 ± 0.039

4.985 ± 0.048

3.407 ± 0.031

8.307 ± 0.044

2.434 ± 0.021

4.608 ± 0.036

2.752 ± 0.038

10.572 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.509 ± 0.024

2.613 ± 0.031

5.59 ± 0.044

3.983 ± 0.031

6.936 ± 0.054

5.741 ± 0.038

5.984 ± 0.039

7.398 ± 0.047

1.394 ± 0.021

2.239 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski