Amino acid dipepetide frequency for Tuber aestivum betaendornavirus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.109AlaAla: 3.109 ± 0.0
0.311AlaCys: 0.311 ± 0.0
2.488AlaAsp: 2.488 ± 0.0
3.731AlaGlu: 3.731 ± 0.0
1.866AlaPhe: 1.866 ± 0.0
2.177AlaGly: 2.177 ± 0.0
2.488AlaHis: 2.488 ± 0.0
2.488AlaIle: 2.488 ± 0.0
6.53AlaLys: 6.53 ± 0.0
2.177AlaLeu: 2.177 ± 0.0
2.799AlaMet: 2.799 ± 0.0
2.799AlaAsn: 2.799 ± 0.0
2.488AlaPro: 2.488 ± 0.0
0.311AlaGln: 0.311 ± 0.0
1.866AlaArg: 1.866 ± 0.0
2.799AlaSer: 2.799 ± 0.0
2.177AlaThr: 2.177 ± 0.0
3.109AlaVal: 3.109 ± 0.0
0.622AlaTrp: 0.622 ± 0.0
1.244AlaTyr: 1.244 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.622CysAla: 0.622 ± 0.0
0.622CysCys: 0.622 ± 0.0
0.622CysAsp: 0.622 ± 0.0
0.311CysGlu: 0.311 ± 0.0
1.244CysPhe: 1.244 ± 0.0
1.866CysGly: 1.866 ± 0.0
1.244CysHis: 1.244 ± 0.0
0.622CysIle: 0.622 ± 0.0
1.866CysLys: 1.866 ± 0.0
1.555CysLeu: 1.555 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.311CysAsn: 0.311 ± 0.0
1.555CysPro: 1.555 ± 0.0
0.622CysGln: 0.622 ± 0.0
0.311CysArg: 0.311 ± 0.0
0.933CysSer: 0.933 ± 0.0
0.622CysThr: 0.622 ± 0.0
1.866CysVal: 1.866 ± 0.0
0.622CysTrp: 0.622 ± 0.0
0.311CysTyr: 0.311 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
0.933AspAla: 0.933 ± 0.0
1.244AspCys: 1.244 ± 0.0
3.731AspAsp: 3.731 ± 0.0
6.841AspGlu: 6.841 ± 0.0
4.664AspPhe: 4.664 ± 0.0
4.353AspGly: 4.353 ± 0.0
0.933AspHis: 0.933 ± 0.0
2.799AspIle: 2.799 ± 0.0
1.866AspLys: 1.866 ± 0.0
6.53AspLeu: 6.53 ± 0.0
2.488AspMet: 2.488 ± 0.0
3.42AspAsn: 3.42 ± 0.0
2.799AspPro: 2.799 ± 0.0
1.244AspGln: 1.244 ± 0.0
2.177AspArg: 2.177 ± 0.0
5.597AspSer: 5.597 ± 0.0
2.799AspThr: 2.799 ± 0.0
3.109AspVal: 3.109 ± 0.0
1.555AspTrp: 1.555 ± 0.0
2.488AspTyr: 2.488 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
3.109GluAla: 3.109 ± 0.0
0.933GluCys: 0.933 ± 0.0
4.664GluAsp: 4.664 ± 0.0
4.664GluGlu: 4.664 ± 0.0
4.042GluPhe: 4.042 ± 0.0
4.664GluGly: 4.664 ± 0.0
2.488GluHis: 2.488 ± 0.0
3.731GluIle: 3.731 ± 0.0
5.286GluLys: 5.286 ± 0.0
4.353GluLeu: 4.353 ± 0.0
1.244GluMet: 1.244 ± 0.0
6.53GluAsn: 6.53 ± 0.0
3.731GluPro: 3.731 ± 0.0
1.555GluGln: 1.555 ± 0.0
3.109GluArg: 3.109 ± 0.0
4.042GluSer: 4.042 ± 0.0
4.353GluThr: 4.353 ± 0.0
1.866GluVal: 1.866 ± 0.0
0.622GluTrp: 0.622 ± 0.0
1.866GluTyr: 1.866 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
0.622PheAla: 0.622 ± 0.0
0.933PheCys: 0.933 ± 0.0
3.109PheAsp: 3.109 ± 0.0
3.42PheGlu: 3.42 ± 0.0
1.866PhePhe: 1.866 ± 0.0
1.244PheGly: 1.244 ± 0.0
0.933PheHis: 0.933 ± 0.0
2.799PheIle: 2.799 ± 0.0
3.731PheLys: 3.731 ± 0.0
3.109PheLeu: 3.109 ± 0.0
1.244PheMet: 1.244 ± 0.0
3.109PheAsn: 3.109 ± 0.0
2.177PhePro: 2.177 ± 0.0
1.244PheGln: 1.244 ± 0.0
0.933PheArg: 0.933 ± 0.0
3.731PheSer: 3.731 ± 0.0
1.555PheThr: 1.555 ± 0.0
2.177PheVal: 2.177 ± 0.0
0.933PheTrp: 0.933 ± 0.0
1.866PheTyr: 1.866 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.488GlyAla: 2.488 ± 0.0
0.311GlyCys: 0.311 ± 0.0
3.42GlyAsp: 3.42 ± 0.0
3.109GlyGlu: 3.109 ± 0.0
1.866GlyPhe: 1.866 ± 0.0
3.109GlyGly: 3.109 ± 0.0
1.244GlyHis: 1.244 ± 0.0
3.42GlyIle: 3.42 ± 0.0
8.085GlyLys: 8.085 ± 0.0
3.42GlyLeu: 3.42 ± 0.0
2.177GlyMet: 2.177 ± 0.0
3.109GlyAsn: 3.109 ± 0.0
1.866GlyPro: 1.866 ± 0.0
0.933GlyGln: 0.933 ± 0.0
2.488GlyArg: 2.488 ± 0.0
4.353GlySer: 4.353 ± 0.0
2.799GlyThr: 2.799 ± 0.0
3.42GlyVal: 3.42 ± 0.0
0.622GlyTrp: 0.622 ± 0.0
2.177GlyTyr: 2.177 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
3.109HisAla: 3.109 ± 0.0
0.933HisCys: 0.933 ± 0.0
1.866HisAsp: 1.866 ± 0.0
2.177HisGlu: 2.177 ± 0.0
0.622HisPhe: 0.622 ± 0.0
1.244HisGly: 1.244 ± 0.0
1.555HisHis: 1.555 ± 0.0
0.933HisIle: 0.933 ± 0.0
1.555HisLys: 1.555 ± 0.0
3.109HisLeu: 3.109 ± 0.0
0.933HisMet: 0.933 ± 0.0
1.555HisAsn: 1.555 ± 0.0
0.933HisPro: 0.933 ± 0.0
0.933HisGln: 0.933 ± 0.0
0.933HisArg: 0.933 ± 0.0
3.731HisSer: 3.731 ± 0.0
0.0HisThr: 0.0 ± 0.0
2.799HisVal: 2.799 ± 0.0
1.244HisTrp: 1.244 ± 0.0
0.311HisTyr: 0.311 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
2.488IleAla: 2.488 ± 0.0
1.244IleCys: 1.244 ± 0.0
4.664IleAsp: 4.664 ± 0.0
4.664IleGlu: 4.664 ± 0.0
1.866IlePhe: 1.866 ± 0.0
4.042IleGly: 4.042 ± 0.0
2.177IleHis: 2.177 ± 0.0
2.799IleIle: 2.799 ± 0.0
3.109IleLys: 3.109 ± 0.0
2.488IleLeu: 2.488 ± 0.0
2.488IleMet: 2.488 ± 0.0
4.353IleAsn: 4.353 ± 0.0
3.42IlePro: 3.42 ± 0.0
1.866IleGln: 1.866 ± 0.0
1.866IleArg: 1.866 ± 0.0
2.488IleSer: 2.488 ± 0.0
4.042IleThr: 4.042 ± 0.0
3.731IleVal: 3.731 ± 0.0
0.0IleTrp: 0.0 ± 0.0
1.555IleTyr: 1.555 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
3.109LysAla: 3.109 ± 0.0
1.555LysCys: 1.555 ± 0.0
4.042LysAsp: 4.042 ± 0.0
4.353LysGlu: 4.353 ± 0.0
3.731LysPhe: 3.731 ± 0.0
4.042LysGly: 4.042 ± 0.0
2.177LysHis: 2.177 ± 0.0
3.42LysIle: 3.42 ± 0.0
7.463LysLys: 7.463 ± 0.0
9.017LysLeu: 9.017 ± 0.0
1.244LysMet: 1.244 ± 0.0
3.109LysAsn: 3.109 ± 0.0
4.042LysPro: 4.042 ± 0.0
2.177LysGln: 2.177 ± 0.0
5.286LysArg: 5.286 ± 0.0
6.219LysSer: 6.219 ± 0.0
8.085LysThr: 8.085 ± 0.0
4.353LysVal: 4.353 ± 0.0
0.311LysTrp: 0.311 ± 0.0
2.177LysTyr: 2.177 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
4.975LeuAla: 4.975 ± 0.0
0.933LeuCys: 0.933 ± 0.0
5.286LeuAsp: 5.286 ± 0.0
4.353LeuGlu: 4.353 ± 0.0
2.799LeuPhe: 2.799 ± 0.0
5.286LeuGly: 5.286 ± 0.0
2.177LeuHis: 2.177 ± 0.0
9.017LeuIle: 9.017 ± 0.0
8.085LeuLys: 8.085 ± 0.0
7.463LeuLeu: 7.463 ± 0.0
3.731LeuMet: 3.731 ± 0.0
4.975LeuAsn: 4.975 ± 0.0
2.799LeuPro: 2.799 ± 0.0
1.555LeuGln: 1.555 ± 0.0
1.866LeuArg: 1.866 ± 0.0
7.463LeuSer: 7.463 ± 0.0
7.152LeuThr: 7.152 ± 0.0
6.53LeuVal: 6.53 ± 0.0
1.244LeuTrp: 1.244 ± 0.0
1.244LeuTyr: 1.244 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.488MetAla: 2.488 ± 0.0
0.622MetCys: 0.622 ± 0.0
1.555MetAsp: 1.555 ± 0.0
2.488MetGlu: 2.488 ± 0.0
0.311MetPhe: 0.311 ± 0.0
1.244MetGly: 1.244 ± 0.0
0.622MetHis: 0.622 ± 0.0
1.244MetIle: 1.244 ± 0.0
3.42MetLys: 3.42 ± 0.0
2.799MetLeu: 2.799 ± 0.0
1.866MetMet: 1.866 ± 0.0
1.555MetAsn: 1.555 ± 0.0
0.311MetPro: 0.311 ± 0.0
1.555MetGln: 1.555 ± 0.0
1.555MetArg: 1.555 ± 0.0
1.866MetSer: 1.866 ± 0.0
2.799MetThr: 2.799 ± 0.0
0.933MetVal: 0.933 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.933MetTyr: 0.933 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.488AsnAla: 2.488 ± 0.0
0.933AsnCys: 0.933 ± 0.0
4.353AsnAsp: 4.353 ± 0.0
3.42AsnGlu: 3.42 ± 0.0
2.177AsnPhe: 2.177 ± 0.0
1.866AsnGly: 1.866 ± 0.0
1.555AsnHis: 1.555 ± 0.0
3.731AsnIle: 3.731 ± 0.0
4.664AsnLys: 4.664 ± 0.0
6.219AsnLeu: 6.219 ± 0.0
1.555AsnMet: 1.555 ± 0.0
4.042AsnAsn: 4.042 ± 0.0
3.42AsnPro: 3.42 ± 0.0
0.933AsnGln: 0.933 ± 0.0
2.488AsnArg: 2.488 ± 0.0
5.908AsnSer: 5.908 ± 0.0
2.488AsnThr: 2.488 ± 0.0
3.42AsnVal: 3.42 ± 0.0
1.555AsnTrp: 1.555 ± 0.0
1.555AsnTyr: 1.555 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
0.933ProAla: 0.933 ± 0.0
1.555ProCys: 1.555 ± 0.0
2.488ProAsp: 2.488 ± 0.0
4.042ProGlu: 4.042 ± 0.0
1.244ProPhe: 1.244 ± 0.0
3.109ProGly: 3.109 ± 0.0
1.244ProHis: 1.244 ± 0.0
0.311ProIle: 0.311 ± 0.0
2.799ProLys: 2.799 ± 0.0
3.731ProLeu: 3.731 ± 0.0
0.311ProMet: 0.311 ± 0.0
2.177ProAsn: 2.177 ± 0.0
0.622ProPro: 0.622 ± 0.0
1.555ProGln: 1.555 ± 0.0
0.622ProArg: 0.622 ± 0.0
8.085ProSer: 8.085 ± 0.0
2.488ProThr: 2.488 ± 0.0
6.219ProVal: 6.219 ± 0.0
0.933ProTrp: 0.933 ± 0.0
1.555ProTyr: 1.555 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
1.555GlnAla: 1.555 ± 0.0
0.622GlnCys: 0.622 ± 0.0
1.555GlnAsp: 1.555 ± 0.0
1.866GlnGlu: 1.866 ± 0.0
1.555GlnPhe: 1.555 ± 0.0
1.866GlnGly: 1.866 ± 0.0
1.866GlnHis: 1.866 ± 0.0
1.244GlnIle: 1.244 ± 0.0
0.933GlnLys: 0.933 ± 0.0
1.866GlnLeu: 1.866 ± 0.0
0.622GlnMet: 0.622 ± 0.0
0.622GlnAsn: 0.622 ± 0.0
1.555GlnPro: 1.555 ± 0.0
2.799GlnGln: 2.799 ± 0.0
0.933GlnArg: 0.933 ± 0.0
1.244GlnSer: 1.244 ± 0.0
2.177GlnThr: 2.177 ± 0.0
1.866GlnVal: 1.866 ± 0.0
0.311GlnTrp: 0.311 ± 0.0
1.244GlnTyr: 1.244 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
2.799ArgAla: 2.799 ± 0.0
0.622ArgCys: 0.622 ± 0.0
1.555ArgAsp: 1.555 ± 0.0
2.488ArgGlu: 2.488 ± 0.0
2.177ArgPhe: 2.177 ± 0.0
1.866ArgGly: 1.866 ± 0.0
0.933ArgHis: 0.933 ± 0.0
2.488ArgIle: 2.488 ± 0.0
1.555ArgLys: 1.555 ± 0.0
4.975ArgLeu: 4.975 ± 0.0
0.311ArgMet: 0.311 ± 0.0
1.555ArgAsn: 1.555 ± 0.0
1.866ArgPro: 1.866 ± 0.0
1.866ArgGln: 1.866 ± 0.0
1.866ArgArg: 1.866 ± 0.0
1.244ArgSer: 1.244 ± 0.0
1.555ArgThr: 1.555 ± 0.0
3.731ArgVal: 3.731 ± 0.0
1.244ArgTrp: 1.244 ± 0.0
1.555ArgTyr: 1.555 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
2.177SerAla: 2.177 ± 0.0
0.933SerCys: 0.933 ± 0.0
6.219SerAsp: 6.219 ± 0.0
4.353SerGlu: 4.353 ± 0.0
2.488SerPhe: 2.488 ± 0.0
3.109SerGly: 3.109 ± 0.0
3.42SerHis: 3.42 ± 0.0
4.975SerIle: 4.975 ± 0.0
4.353SerLys: 4.353 ± 0.0
8.085SerLeu: 8.085 ± 0.0
3.42SerMet: 3.42 ± 0.0
4.664SerAsn: 4.664 ± 0.0
4.353SerPro: 4.353 ± 0.0
2.177SerGln: 2.177 ± 0.0
3.731SerArg: 3.731 ± 0.0
8.396SerSer: 8.396 ± 0.0
4.664SerThr: 4.664 ± 0.0
5.908SerVal: 5.908 ± 0.0
0.933SerTrp: 0.933 ± 0.0
1.866SerTyr: 1.866 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
3.109ThrAla: 3.109 ± 0.0
0.622ThrCys: 0.622 ± 0.0
3.42ThrAsp: 3.42 ± 0.0
1.866ThrGlu: 1.866 ± 0.0
2.177ThrPhe: 2.177 ± 0.0
4.664ThrGly: 4.664 ± 0.0
0.933ThrHis: 0.933 ± 0.0
3.731ThrIle: 3.731 ± 0.0
5.908ThrLys: 5.908 ± 0.0
6.841ThrLeu: 6.841 ± 0.0
2.488ThrMet: 2.488 ± 0.0
3.42ThrAsn: 3.42 ± 0.0
4.042ThrPro: 4.042 ± 0.0
1.866ThrGln: 1.866 ± 0.0
1.866ThrArg: 1.866 ± 0.0
4.664ThrSer: 4.664 ± 0.0
5.597ThrThr: 5.597 ± 0.0
3.109ThrVal: 3.109 ± 0.0
1.866ThrTrp: 1.866 ± 0.0
1.244ThrTyr: 1.244 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
3.42ValAla: 3.42 ± 0.0
1.555ValCys: 1.555 ± 0.0
4.353ValAsp: 4.353 ± 0.0
4.664ValGlu: 4.664 ± 0.0
2.177ValPhe: 2.177 ± 0.0
2.799ValGly: 2.799 ± 0.0
1.244ValHis: 1.244 ± 0.0
4.042ValIle: 4.042 ± 0.0
4.975ValLys: 4.975 ± 0.0
7.463ValLeu: 7.463 ± 0.0
0.622ValMet: 0.622 ± 0.0
4.664ValAsn: 4.664 ± 0.0
3.731ValPro: 3.731 ± 0.0
1.244ValGln: 1.244 ± 0.0
2.488ValArg: 2.488 ± 0.0
4.042ValSer: 4.042 ± 0.0
5.908ValThr: 5.908 ± 0.0
4.042ValVal: 4.042 ± 0.0
0.933ValTrp: 0.933 ± 0.0
1.866ValTyr: 1.866 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.244TrpAla: 1.244 ± 0.0
0.311TrpCys: 0.311 ± 0.0
0.622TrpAsp: 0.622 ± 0.0
1.244TrpGlu: 1.244 ± 0.0
0.622TrpPhe: 0.622 ± 0.0
0.622TrpGly: 0.622 ± 0.0
0.933TrpHis: 0.933 ± 0.0
0.0TrpIle: 0.0 ± 0.0
1.866TrpLys: 1.866 ± 0.0
0.933TrpLeu: 0.933 ± 0.0
0.311TrpMet: 0.311 ± 0.0
0.622TrpAsn: 0.622 ± 0.0
0.311TrpPro: 0.311 ± 0.0
0.311TrpGln: 0.311 ± 0.0
0.311TrpArg: 0.311 ± 0.0
1.244TrpSer: 1.244 ± 0.0
1.244TrpThr: 1.244 ± 0.0
2.177TrpVal: 2.177 ± 0.0
0.622TrpTrp: 0.622 ± 0.0
0.622TrpTyr: 0.622 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.799TyrAla: 2.799 ± 0.0
0.933TyrCys: 0.933 ± 0.0
1.555TyrAsp: 1.555 ± 0.0
2.799TyrGlu: 2.799 ± 0.0
1.244TyrPhe: 1.244 ± 0.0
1.555TyrGly: 1.555 ± 0.0
0.311TyrHis: 0.311 ± 0.0
1.555TyrIle: 1.555 ± 0.0
1.866TyrLys: 1.866 ± 0.0
2.799TyrLeu: 2.799 ± 0.0
0.0TyrMet: 0.0 ± 0.0
2.177TyrAsn: 2.177 ± 0.0
0.0TyrPro: 0.0 ± 0.0
1.555TyrGln: 1.555 ± 0.0
1.555TyrArg: 1.555 ± 0.0
2.177TyrSer: 2.177 ± 0.0
0.933TyrThr: 0.933 ± 0.0
1.866TyrVal: 1.866 ± 0.0
0.0TyrTrp: 0.0 ± 0.0
1.244TyrTyr: 1.244 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (3217 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski