Avian paramyxovirus 15

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Avian metaavulavirus 15

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W6R4X6|A0A1W6R4X6_9MONO Nucleocapsid OS=Avian paramyxovirus 15 OX=1983777 GN=NP PE=3 SV=1
MM1 pKa = 7.48EE2 pKa = 5.32FKK4 pKa = 10.59SDD6 pKa = 3.85EE7 pKa = 4.6EE8 pKa = 4.66INDD11 pKa = 4.12LLNLSSSVISEE22 pKa = 4.02LQRR25 pKa = 11.84AEE27 pKa = 4.3LKK29 pKa = 10.66PPQTLGKK36 pKa = 8.76PQVPSGNTTSLISLWEE52 pKa = 4.06AEE54 pKa = 4.25GAPEE58 pKa = 4.14NKK60 pKa = 9.73LGRR63 pKa = 11.84GNTGTATDD71 pKa = 3.91TEE73 pKa = 4.82GEE75 pKa = 3.89QDD77 pKa = 3.49QQIVQTEE84 pKa = 4.12IEE86 pKa = 4.22QTHH89 pKa = 6.15TEE91 pKa = 4.11DD92 pKa = 3.48TCPKK96 pKa = 9.38EE97 pKa = 4.2IPVDD101 pKa = 3.68NPGSFTQEE109 pKa = 3.24SDD111 pKa = 3.74LDD113 pKa = 3.72KK114 pKa = 10.74TLKK117 pKa = 10.71KK118 pKa = 10.62LEE120 pKa = 4.02QRR122 pKa = 11.84NSNLLKK128 pKa = 10.15KK129 pKa = 9.03TDD131 pKa = 3.73SPDD134 pKa = 3.1AGTTFKK140 pKa = 10.84KK141 pKa = 10.52GGQIAPKK148 pKa = 9.37HH149 pKa = 5.49QPLPSQVIEE158 pKa = 4.51GNLPPQDD165 pKa = 3.94CRR167 pKa = 11.84QSRR170 pKa = 11.84PSRR173 pKa = 11.84TDD175 pKa = 2.66ASQRR179 pKa = 11.84PSTTPKK185 pKa = 9.69GAHH188 pKa = 6.18PQLHH192 pKa = 6.78PFQDD196 pKa = 3.59IEE198 pKa = 4.56EE199 pKa = 4.36NTQSVPLDD207 pKa = 3.74HH208 pKa = 7.16PLKK211 pKa = 10.31LLVGATPDD219 pKa = 3.18VHH221 pKa = 7.85QFEE224 pKa = 4.58QSQGEE229 pKa = 4.32NGAHH233 pKa = 5.65VGNVLEE239 pKa = 4.37SASFAEE245 pKa = 4.41MTLSVLNEE253 pKa = 3.51VLIRR257 pKa = 11.84VARR260 pKa = 11.84MEE262 pKa = 4.15EE263 pKa = 4.17KK264 pKa = 10.61INDD267 pKa = 3.55ILKK270 pKa = 9.19TNSTIPLIRR279 pKa = 11.84NDD281 pKa = 3.0ISQLKK286 pKa = 8.45ATTALLSTQMASVQVLDD303 pKa = 4.39PGNAGFKK310 pKa = 10.51SLSEE314 pKa = 3.99MKK316 pKa = 10.34AASKK320 pKa = 9.74PAIIAISGPGDD331 pKa = 3.46MDD333 pKa = 4.27AVPIQDD339 pKa = 3.67KK340 pKa = 11.14LLVKK344 pKa = 10.49DD345 pKa = 3.51VLGRR349 pKa = 11.84PISAEE354 pKa = 3.68RR355 pKa = 11.84NIQAKK360 pKa = 7.11EE361 pKa = 4.25TPDD364 pKa = 3.59SVITQSDD371 pKa = 3.06KK372 pKa = 11.57DD373 pKa = 4.29AIQSLIDD380 pKa = 3.59TLVEE384 pKa = 4.14DD385 pKa = 3.83TSKK388 pKa = 10.59QARR391 pKa = 11.84LKK393 pKa = 10.37AQLEE397 pKa = 4.3RR398 pKa = 11.84VQDD401 pKa = 3.66KK402 pKa = 10.98PGLLKK407 pKa = 10.66LKK409 pKa = 10.38RR410 pKa = 11.84LIYY413 pKa = 10.29NAA415 pKa = 4.23

Molecular weight: 45.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W6R4T0|A0A1W6R4T0_9MONO Fusion glycoprotein F0 OS=Avian paramyxovirus 15 OX=1983777 GN=F PE=3 SV=1
MM1 pKa = 7.85ASTSIPLHH9 pKa = 6.37INQSDD14 pKa = 3.88PSSEE18 pKa = 4.02LLSFPLIFTNNDD30 pKa = 3.22SGSKK34 pKa = 8.52TLQPQVRR41 pKa = 11.84FSQLGDD47 pKa = 3.2IQGGKK52 pKa = 10.26DD53 pKa = 3.05EE54 pKa = 4.75TVFITLYY61 pKa = 11.1GFIQTEE67 pKa = 4.09QDD69 pKa = 4.11SLDD72 pKa = 3.63LTHH75 pKa = 6.4NQSTFQVLGQTSKK88 pKa = 11.11PDD90 pKa = 3.88TITAACIPLGATTLRR105 pKa = 11.84STITRR110 pKa = 11.84MAEE113 pKa = 3.68EE114 pKa = 4.12SLEE117 pKa = 4.02LLILVKK123 pKa = 10.51KK124 pKa = 10.42SAVSSEE130 pKa = 3.73KK131 pKa = 10.68LAVSFINIPPSLAGILVIRR150 pKa = 11.84AGGFILSAEE159 pKa = 4.6EE160 pKa = 4.22YY161 pKa = 10.08VKK163 pKa = 11.03SPSKK167 pKa = 10.63LQAGYY172 pKa = 9.62QYY174 pKa = 11.13KK175 pKa = 10.17FKK177 pKa = 10.59PVFITCTRR185 pKa = 11.84IFKK188 pKa = 10.58GKK190 pKa = 9.8LYY192 pKa = 10.26KK193 pKa = 10.29VPKK196 pKa = 8.6SMHH199 pKa = 6.19YY200 pKa = 9.7IASEE204 pKa = 3.99LLYY207 pKa = 10.79KK208 pKa = 10.57AVLEE212 pKa = 4.33IQFQLDD218 pKa = 3.73IKK220 pKa = 10.24PDD222 pKa = 3.49HH223 pKa = 6.98PQTKK227 pKa = 8.63MLKK230 pKa = 10.11KK231 pKa = 9.99QDD233 pKa = 3.75TNEE236 pKa = 3.76GPEE239 pKa = 4.01YY240 pKa = 10.83YY241 pKa = 10.79GFVWFHH247 pKa = 6.5LLNFKK252 pKa = 9.06KK253 pKa = 7.4TTARR257 pKa = 11.84GEE259 pKa = 3.75IRR261 pKa = 11.84TLEE264 pKa = 4.39KK265 pKa = 10.51ISDD268 pKa = 4.2KK269 pKa = 10.51IRR271 pKa = 11.84AMGIKK276 pKa = 10.13VSLYY280 pKa = 10.38DD281 pKa = 3.25LWGPTILAEE290 pKa = 4.02ITGKK294 pKa = 9.9KK295 pKa = 9.38SKK297 pKa = 9.98YY298 pKa = 8.52AQGFFSLNGCACLPVARR315 pKa = 11.84ASPEE319 pKa = 3.55IAKK322 pKa = 9.59LIWSCSTRR330 pKa = 11.84IKK332 pKa = 10.52SATIIVQSSDD342 pKa = 2.76KK343 pKa = 10.86RR344 pKa = 11.84GLLNSEE350 pKa = 4.11DD351 pKa = 4.61LEE353 pKa = 4.47IKK355 pKa = 10.34GAVGVSPRR363 pKa = 11.84KK364 pKa = 9.76LGSYY368 pKa = 10.68SLFKK372 pKa = 10.72KK373 pKa = 9.92HH374 pKa = 6.4

Molecular weight: 41.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

4581

374

2216

763.5

85.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.112 ± 0.611

1.877 ± 0.234

4.824 ± 0.359

5.523 ± 0.35

3.209 ± 0.377

5.152 ± 0.337

1.877 ± 0.333

8.557 ± 0.567

5.283 ± 0.552

11.111 ± 0.477

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.877 ± 0.286

5.108 ± 0.44

4.475 ± 0.499

4.431 ± 0.429

4.671 ± 0.533

9.146 ± 0.179

6.702 ± 0.406

5.763 ± 0.424

1.026 ± 0.187

3.274 ± 0.416
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski