Duck adenovirus 2

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Duck aviadenovirus B

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 36 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A075FAC0|A0A075FAC0_9ADEN ORF55A OS=Duck adenovirus 2 OX=1520006 PE=4 SV=1
MM1 pKa = 7.77AEE3 pKa = 4.61GGQDD7 pKa = 3.59PNQPDD12 pKa = 3.57PMRR15 pKa = 11.84EE16 pKa = 3.78LEE18 pKa = 4.4RR19 pKa = 11.84IEE21 pKa = 4.24EE22 pKa = 3.94EE23 pKa = 4.48LMRR26 pKa = 11.84IDD28 pKa = 5.87DD29 pKa = 4.0EE30 pKa = 6.44RR31 pKa = 11.84IMNNRR36 pKa = 11.84ALADD40 pKa = 3.1IRR42 pKa = 11.84ALVDD46 pKa = 4.19EE47 pKa = 5.56IEE49 pKa = 5.6NEE51 pKa = 4.01MQQNEE56 pKa = 4.22NQEE59 pKa = 4.14GEE61 pKa = 4.19EE62 pKa = 4.49DD63 pKa = 3.99DD64 pKa = 4.34LLNYY68 pKa = 10.33DD69 pKa = 4.25VLQLMSFEE77 pKa = 4.0NHH79 pKa = 6.45HH80 pKa = 6.95IIVSSCQCHH89 pKa = 4.54NWYY92 pKa = 8.74MRR94 pKa = 11.84DD95 pKa = 3.05FCMSIFSNLEE105 pKa = 3.69SPIFPTVWSSLADD118 pKa = 3.99DD119 pKa = 4.86PDD121 pKa = 5.1LYY123 pKa = 11.4GCYY126 pKa = 10.04FISSNMAAMFSRR138 pKa = 11.84MDD140 pKa = 3.67PVFMDD145 pKa = 3.2RR146 pKa = 11.84RR147 pKa = 11.84VGHH150 pKa = 4.99SHH152 pKa = 6.03GVIINVSEE160 pKa = 3.95LTRR163 pKa = 11.84YY164 pKa = 7.22TFLSAVCAIADD175 pKa = 3.88MGAMPCEE182 pKa = 4.57YY183 pKa = 10.01IRR185 pKa = 11.84FMSLMDD191 pKa = 3.95INQLFLSCPRR201 pKa = 11.84WMFEE205 pKa = 4.38LMQIFTKK212 pKa = 10.57YY213 pKa = 9.31YY214 pKa = 8.16SEE216 pKa = 5.67RR217 pKa = 11.84MMTMM221 pKa = 3.48

Molecular weight: 25.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A075FA61|A0A075FA61_9ADEN DBP OS=Duck adenovirus 2 OX=1520006 PE=4 SV=1
MM1 pKa = 7.74SILISPSDD9 pKa = 3.59NRR11 pKa = 11.84GWGAMMRR18 pKa = 11.84RR19 pKa = 11.84SRR21 pKa = 11.84SRR23 pKa = 11.84SVMRR27 pKa = 11.84RR28 pKa = 11.84RR29 pKa = 11.84PSMRR33 pKa = 11.84GTGLRR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84LTRR43 pKa = 11.84VVRR46 pKa = 11.84AVLPAVPGPVRR57 pKa = 11.84SLLGFGRR64 pKa = 11.84RR65 pKa = 11.84RR66 pKa = 11.84MRR68 pKa = 11.84RR69 pKa = 11.84SGSRR73 pKa = 11.84TTLVAVTSTRR83 pKa = 11.84RR84 pKa = 11.84RR85 pKa = 11.84RR86 pKa = 11.84RR87 pKa = 11.84RR88 pKa = 3.19

Molecular weight: 10.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

36

0

36

13216

40

1341

367.1

41.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.114 ± 0.321

1.907 ± 0.233

5.66 ± 0.287

5.561 ± 0.58

4.404 ± 0.179

5.751 ± 0.283

2.467 ± 0.216

5.607 ± 0.248

4.918 ± 0.392

8.074 ± 0.405

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.057 ± 0.234

5.281 ± 0.494

5.985 ± 0.382

3.352 ± 0.244

5.524 ± 0.499

8.058 ± 0.405

6.008 ± 0.364

6.78 ± 0.388

1.271 ± 0.086

4.222 ± 0.281
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski