Parapedobacter luteus

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Parapedobacter

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4124 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T5DU17|A0A1T5DU17_9SPHI 3-oxoacyl-(Acyl-carrier-protein) synthase OS=Parapedobacter luteus OX=623280 GN=SAMN05660226_02982 PE=4 SV=1
MM1 pKa = 8.13SEE3 pKa = 4.01FCDD6 pKa = 4.19VNDD9 pKa = 5.57LGDD12 pKa = 3.94FLIKK16 pKa = 10.43EE17 pKa = 4.01MGMYY21 pKa = 9.71IDD23 pKa = 3.99SDD25 pKa = 3.79LRR27 pKa = 11.84NSYY30 pKa = 10.93LNAYY34 pKa = 9.36VLTSNFKK41 pKa = 10.38NAII44 pKa = 3.74

Molecular weight: 5.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T5F9K7|A0A1T5F9K7_9SPHI Cytochrome c mono-and diheme variants OS=Parapedobacter luteus OX=623280 GN=SAMN05660226_03841 PE=4 SV=1
MM1 pKa = 7.62RR2 pKa = 11.84PSTVVRR8 pKa = 11.84ATCTMRR14 pKa = 11.84RR15 pKa = 11.84RR16 pKa = 11.84ILQEE20 pKa = 3.59PEE22 pKa = 3.63AQYY25 pKa = 9.26KK26 pKa = 7.97TIRR29 pKa = 11.84IDD31 pKa = 3.35TEE33 pKa = 3.5EE34 pKa = 4.1DD35 pKa = 3.65VFVRR39 pKa = 11.84NRR41 pKa = 11.84LFNRR45 pKa = 11.84HH46 pKa = 5.72ILRR49 pKa = 11.84LYY51 pKa = 10.58QSTCSFTGMRR61 pKa = 11.84LVSRR65 pKa = 11.84HH66 pKa = 4.45GHH68 pKa = 5.07SFVDD72 pKa = 4.38GFWKK76 pKa = 10.38ILSKK80 pKa = 10.56FVNCGLYY87 pKa = 10.14QSNHH91 pKa = 4.36YY92 pKa = 9.74NRR94 pKa = 11.84NKK96 pKa = 10.49SS97 pKa = 3.15

Molecular weight: 11.61 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4124

0

4124

1476030

12

3151

357.9

40.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.51 ± 0.039

0.75 ± 0.012

5.59 ± 0.026

5.74 ± 0.036

4.648 ± 0.028

7.354 ± 0.039

2.194 ± 0.02

6.474 ± 0.03

5.05 ± 0.037

9.657 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.262 ± 0.016

4.735 ± 0.04

4.135 ± 0.022

3.87 ± 0.022

5.361 ± 0.029

5.876 ± 0.028

5.611 ± 0.035

6.76 ± 0.036

1.322 ± 0.014

4.1 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski