Giant panda polyomavirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Deltapolyomavirus; Ailuropoda melanoleuca polyomavirus 1

Average proteome isoelectric point is 5.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A220IG73|A0A220IG73_9POLY Minor capsid protein OS=Giant panda polyomavirus OX=2016463 PE=3 SV=1
MM1 pKa = 7.47GGVLSIVVDD10 pKa = 4.58LFTLLPEE17 pKa = 4.81LSASTGFGIEE27 pKa = 4.44AILAGEE33 pKa = 4.15AAASVEE39 pKa = 4.07AQVASLMLIEE49 pKa = 4.55TMGPLDD55 pKa = 4.02ALASLGLSAEE65 pKa = 4.38TFSLLSAMPGFFQDD79 pKa = 3.17IVGLGVLFQTVSGASSLVAAGIQLGRR105 pKa = 11.84HH106 pKa = 4.89EE107 pKa = 4.42VSVVNRR113 pKa = 11.84NMALVPWIPQDD124 pKa = 3.57LFDD127 pKa = 4.7IYY129 pKa = 11.02FPGVSSFSYY138 pKa = 10.26VVNIVADD145 pKa = 3.38WGEE148 pKa = 4.32SLFHH152 pKa = 6.61SLARR156 pKa = 11.84NIWDD160 pKa = 3.25ALMRR164 pKa = 11.84EE165 pKa = 4.09SRR167 pKa = 11.84AQITHH172 pKa = 6.17ATRR175 pKa = 11.84EE176 pKa = 4.05LTLRR180 pKa = 11.84GVQTFQDD187 pKa = 3.04TMARR191 pKa = 11.84VIEE194 pKa = 3.99RR195 pKa = 11.84ARR197 pKa = 11.84WVVTNGPVHH206 pKa = 7.02AYY208 pKa = 10.0SAIEE212 pKa = 4.08EE213 pKa = 4.67YY214 pKa = 10.93YY215 pKa = 10.53RR216 pKa = 11.84ALPPINPAQARR227 pKa = 11.84QLARR231 pKa = 11.84RR232 pKa = 11.84LEE234 pKa = 4.22IKK236 pKa = 9.68TPEE239 pKa = 4.1RR240 pKa = 11.84LTIEE244 pKa = 4.17SPEE247 pKa = 3.9EE248 pKa = 3.87SGEE251 pKa = 4.08VVQRR255 pKa = 11.84YY256 pKa = 7.11EE257 pKa = 3.98PPGGAFQRR265 pKa = 11.84ATPDD269 pKa = 2.53WMLPLILGLYY279 pKa = 10.53GDD281 pKa = 4.65ITPTWSSYY289 pKa = 10.81LEE291 pKa = 4.48HH292 pKa = 8.12IEE294 pKa = 4.84AEE296 pKa = 3.86EE297 pKa = 4.62DD298 pKa = 3.82GPKK301 pKa = 10.08KK302 pKa = 10.18KK303 pKa = 9.95RR304 pKa = 11.84RR305 pKa = 11.84KK306 pKa = 7.86QQ307 pKa = 3.16

Molecular weight: 33.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A220IG84|A0A220IG84_9POLY Small T antigen OS=Giant panda polyomavirus OX=2016463 PE=4 SV=1
MM1 pKa = 7.97DD2 pKa = 4.93AVLTKK7 pKa = 10.6AEE9 pKa = 4.3KK10 pKa = 10.57DD11 pKa = 3.44EE12 pKa = 4.29LMSLLGLAPTCYY24 pKa = 10.84GNLPLMQQKK33 pKa = 9.71YY34 pKa = 9.84KK35 pKa = 10.33KK36 pKa = 10.17ASLKK40 pKa = 9.45FHH42 pKa = 7.18PDD44 pKa = 2.82KK45 pKa = 11.61GGDD48 pKa = 3.55EE49 pKa = 4.35EE50 pKa = 4.93KK51 pKa = 10.28MKK53 pKa = 10.72RR54 pKa = 11.84LNCLFGKK61 pKa = 10.22VYY63 pKa = 11.07NSFSDD68 pKa = 5.19LRR70 pKa = 11.84DD71 pKa = 3.43QPRR74 pKa = 11.84GSCSSQVNLWEE85 pKa = 4.19KK86 pKa = 9.82TVITTADD93 pKa = 3.32FFGKK97 pKa = 10.15KK98 pKa = 8.62FEE100 pKa = 4.61KK101 pKa = 10.71NCVKK105 pKa = 10.31HH106 pKa = 4.75YY107 pKa = 10.16HH108 pKa = 5.05YY109 pKa = 10.62CILEE113 pKa = 4.16GLSKK117 pKa = 11.19YY118 pKa = 7.4CTCICCLLDD127 pKa = 3.74QQHH130 pKa = 6.24HH131 pKa = 4.27QLKK134 pKa = 9.9RR135 pKa = 11.84KK136 pKa = 9.28KK137 pKa = 10.39SKK139 pKa = 10.09PCLVWGEE146 pKa = 4.26CLCFNCYY153 pKa = 10.0RR154 pKa = 11.84SWFGLDD160 pKa = 3.93LNTEE164 pKa = 4.21TLHH167 pKa = 4.91WWKK170 pKa = 10.48FCIYY174 pKa = 9.17RR175 pKa = 11.84LPMEE179 pKa = 4.52WLNILGDD186 pKa = 3.75IKK188 pKa = 11.12LSDD191 pKa = 3.23WW192 pKa = 3.63

Molecular weight: 22.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1899

192

723

379.8

42.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.161 ± 1.18

2.37 ± 0.865

5.477 ± 0.774

5.951 ± 0.591

3.739 ± 0.422

6.108 ± 0.597

1.685 ± 0.273

4.739 ± 0.516

6.161 ± 1.549

9.637 ± 0.892

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.844 ± 0.274

3.739 ± 0.525

7.846 ± 1.093

4.16 ± 0.185

4.476 ± 0.839

7.794 ± 0.463

5.74 ± 0.543

6.108 ± 0.753

1.58 ± 0.448

3.686 ± 0.347
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski